Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01368 ATGAAGAGGTCTAGAGACGATGTTTATGTGAGCTCTCAAATCAAACGGCCCATGGTGTCATCACGAGGGGAAGGCCCGGGGCAACCCCAGATGCTAGGTGGAGGTTCTCAGAAACTGACAACTAATGATGCCTTACTCTATCTCAAGGCTGTCAAGGAAATGTTCCATGACAAGAGGGAAAAATATGATGACTTTCTGGAAGTCATGAAAAATTTCAAGGCACAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTCAACACCTTCTTGCCTAAAGGATATGAAATCACGCTTCCACTGGAGGACGAACAACCTCCTCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTAAACAAAATTAAGGCTCGGTTTCAGGGTGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTATCAAGAGGTTGCTGTCCTTTTCCAAGACCACCAAGACCTGCTTGTTGAGTTCACTCACTTTCTTCCAGATGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAATCTGCTCGGAACTCTTTGCTTCGTGATAGGAGTTCTGTAATGCCAGCAGTGGGGCAAATGCGTCCTGACAAGAGGGAAAGGATCAAGTCTCATGACCATGACCATAGTGTTGATCATCTTGATCCAGATGACAAAGGTTATATGAGGACAGAAAATGAGCTCAGAAGGCGTGGTGAGAAGGAAAAGGACCATAGAGAAGATAGAGACAGGAAAGAGCGGAAATATGACGATAGAGCTTATGAGCATGATAATAGTCGGGAATACAACATGAAGAGTTTCCCCCACAAACCGAAACATGGTGGTAGGTTTGATGATTTTGGCGCTGAACCTCTGCTTCAAGGAGGTGATGGTGATGAACATTTTGGTCTGCGCAGTATGTCATCGCCTTGTGATGATAAAAGTTCTGTGAAAAGTTTGTACAGTCAAGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAACCCTGATGATTATCAGGAATTTTTGAAGTGCCTTCACATCTATAGCAGGGAAATAATTACGCGAGAAGAATTGCAGACATTGGTGGGTGATTTACTGGGAAAATATCCTGACCTTTTGGAGGGGTTCAATGAATTTTTGTCAAGATGTGAGAAGAATGATGGATTCCTCGCTGGTGTAATGAATAAGAAATCCTTATGGAATGAAGGTCATGCATCAAAGTCAGTGAAGGCAGAAGATCGGGATAGAGATAGAGATCGTGGTCGTGGTCGGGATGATGAGGTTAAAGAAAGGGATCGTGAATACCGAGAAAGGGACAGATCTGCTGCCATTGCCAACAAGGATGTGTCAGGTGCCAGGATGTCTATATTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTATCTAACTGTGAGAAATGCAGTCCTAGTTACCGGCTCCTACCAAAAAATTACCCAATACCTGTGGCTAGCCAGAGAACAGAGCTTGGTGCTGAAGTATTGAATGATCATTGGGTGTCTGTGACATCTGGAAGTGAAGACTATTCTTTTAAACATATGCGCAAAAACCAGTATGAAGAGAGCTTATTTAGATGTGAAGATGACAGATTTGAGCTTGATATGCTGTTAGAGTCCGTGAATGCAACCACAAAGCGAGTAGAAGAGCTCCTAGAAAAGATCAATAGTAATATAATCAAAGCAGAAAGTCCAATCCGAATTGAGGAGCACTTAACAGCTTTAAATATAAGGTGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTGAGAAAGAATGCACCTTTAGCTTTGCCAGTTATATTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAACAAAGTTTGGGCTGATATATATGCCAAGAACTATCACAAATCCCTTGATCATCGAAGCTTCTACTTTAAGCAACAGGATGTGAAAAGCTTGAGCACTAAAGCCTTGTTGGCAGAAATTAAAGAAATTAGTGAGAAGAAACATAAAGAAGATGATGCTATTCTTGCAATTGCTGCTGGAAATAGACGGCCGATTCATCCAAATTTGGAATATGAATTTTCTGACCCAGATATTCATGAAGACCTGTATCAGCTCATAAAATATTCTTGTGGAGAAGTTTGTACGACTGAGCAGTTAGATAAAGTTATGAAAATTTGGACAACATTTATAGAGCCCATGCTTGGTGTTCCTTCTCGGCCCCAAGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGAACAATTCCGTCAAAAGTGGTTCTGCAATTGCTGCAGAGAGTAATGGTAGTCCAGGTAGTGGTGCTACCATAATGAATTCTAAACAATTAAGTACTTCTAGAAATGAGGATGAGAGTATTCCATTAGAACAGTCAAATTCTTGCAAAGCATGGCAAATGAATGGAGATGGTGGAGTTAAAGAAGACAATCGTGTTGATACAGACCATACCACTCGGAAGACTGAAACTCTGGGCAGCAGTACACAGCTTTGTAAGATGCAAGCTAGTGCATCCATGCCTGATGGAGGATCAGGATTCAATAAGCAAGAGCATCCTAATGATCGTTTAGTGAATGCTAGTGCCTCACTTGCCTCTGGAATGGAGCACAGTAATGGAAGAACATGCACTGATAATGCATCAGGGCTTACTCAATCTAGACCCGCTGTTGAGGGAGGACTTAATTTACCTTCATCAGAGGGTGGTGATTCTACTAGACTAGGAGCATCTGCGAATGGGATCCTCACCGAAGGCACAAAAGTTCAAAGATACCAAGAAGAATCAGTTGGACACTTAAAGGGCGAAAGAGAAGAGGGTGAATTATCTCCGAATGGAGATTTTGAGGAGGATAACTCTGCAGTGTACGGAGATGCTGGTTTTGAGGCAACAAGTAAGGGAAAGGATGGTGGTATGGCTCAAAAATTCCAAAATAGACATGGAGAAGAAGTTTGTGGTGAAGCTGGAGGAGACAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGTCATCAAAGGTCATTAGAGGACAGTGAAAATGCTTCTGAAAATGGGGACGTTTCTGGCAGTGAGTCTGCTGATGGTGAGTGTTCTCGAGAAGAGCATGAAGATGGTGAACACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGGATGGCCGATGCCAATGATGTTGATGGAGATGGATCTCTGTTGCCATTTTCAGAACGCTTTCTACTAACCGTAAGGCCTCTGGCAAAGTATGTTCCTGCAGCTTTGCACCTTAAAGGAGGGAGTTCTCAGATTTTTTACGGAAATGACTCCTTTTATGTGCTTTTTAGACTTCACCAGACATTATATGAGAGGATACAATCGGCAAAGATCAACTCTTCATCTGCCGAAAGAAAGTGGAAGGCTTCAAATGAAACAAATTCTACTGATCAGTATGGCAGGTTCATGAATGCCTTTTACAGTTTGCTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGACTGTAGGGCTATTATTGGAACTCAATCTTATGTCTTATTTACTTTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCAATTGCAACTGATGAGATGGATAACAAGCTTCTCCAGCTTTATACATATGAGAAATCAAGAAAACCAGGAAGATTTGTGGACAGAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAAAACATGTATAGGATAGAATGTTCATCATCCCGATTATCTATTCAACTGATGGACTCTGGACATGATAAGCCTGAATTGACTGCCGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCATTGTGACTTCCTCTCTGTTGTTCCTGAAAAAAAGGAAAGGTCAAGGATTTTGCTAAAGAGGAATAAACGCAGAAATGCACCTAGTGATGAGTATTCAAGCCCAGCCTTGGAAGGACTACAAGTTAGTAATGGTCTAGAGTGTAAAATAGCTTGCAGTTCATCCAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATGAGTAAGAGAAGGAAAACATTGCATCAGAATGGGTCATGCCATGAACGGGCAAAGGCCTCAAATACATCTTCTAGCAGACTACTGTGGTATCGCAGATTGTTTCCCATTTCGTGA 4269 0.4149 MKRSRDDVYVSSQIKRPMVSSRGEGPGQPQMLGGGSQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAVLFQDHQDLLVEFTHFLPDASAAASAHYAQSARNSLLRDRSSVMPAVGQMRPDKRERIKSHDHDHSVDHLDPDDKGYMRTENELRRRGEKEKDHREDRDRKERKYDDRAYEHDNSREYNMKSFPHKPKHGGRFDDFGAEPLLQGGDGDEHFGLRSMSSPCDDKSSVKSLYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITREELQTLVGDLLGKYPDLLEGFNEFLSRCEKNDGFLAGVMNKKSLWNEGHASKSVKAEDRDRDRDRGRGRDDEVKERDREYRERDRSAAIANKDVSGARMSILSSKDKYMYKPINELDLSNCEKCSPSYRLLPKNYPIPVASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKINSNIIKAESPIRIEEHLTALNIRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWADIYAKNYHKSLDHRSFYFKQQDVKSLSTKALLAEIKEISEKKHKEDDAILAIAAGNRRPIHPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFIEPMLGVPSRPQGAEDTEDVVKAKNNSVKSGSAIAAESNGSPGSGATIMNSKQLSTSRNEDESIPLEQSNSCKAWQMNGDGGVKEDNRVDTDHTTRKTETLGSSTQLCKMQASASMPDGGSGFNKQEHPNDRLVNASASLASGMEHSNGRTCTDNASGLTQSRPAVEGGLNLPSSEGGDSTRLGASANGILTEGTKVQRYQEESVGHLKGEREEGELSPNGDFEEDNSAVYGDAGFEATSKGKDGGMAQKFQNRHGEEVCGEAGGDNDADADDEGEESHQRSLEDSENASENGDVSGSESADGECSREEHEDGEHKAESEGEAEGMADANDVDGDGSLLPFSERFLLTVRPLAKYVPAALHLKGGSSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWKASNETNSTDQYGRFMNAFYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAIATDEMDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDENMYRIECSSSRLSIQLMDSGHDKPELTAVSMDPNFSAYLHCDFLSVVPEKKERSRILLKRNKRRNAPSDEYSSPALEGLQVSNGLECKIACSSSKVSYVLDTEDFLFRMSKRRKTLHQNGSCHERAKASNTSSSRLLWYRRLFPIS 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01368 1422 Pfam Sin3 family co-repressor 502 593 IPR013194 -
Accr9g01368 1422 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Accr9g01368 1422 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Accr9g01368 1422 PANTHER SIN3B-RELATED 37 1282 IPR039774 GO:0003714
Accr9g01368 1422 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Accr9g01368 1422 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 1069 1091 - -
Accr9g01368 1422 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Accr9g01368 1422 MobiDBLite consensus disorder prediction 15 37 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 969 985 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 797 844 - -
Accr9g01368 1422 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Accr9g01368 1422 SMART hdac_interact2seq4b 500 600 IPR013194 -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 208 286 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 429 465 - -
Accr9g01368 1422 Coils Coil 569 593 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 1042 1056 - -
Accr9g01368 1422 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Accr9g01368 1422 SUPERFAMILY PAH2 domain 340 406 IPR036600 GO:0006355
Accr9g01368 1422 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Accr9g01368 1422 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Accr9g01368 1422 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Accr9g01368 1422 MobiDBLite consensus disorder prediction 1026 1102 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 797 872 - -
Accr9g01368 1422 Pfam C-terminal domain of Sin3a protein 1138 1382 IPR031693 -
Accr9g01368 1422 SUPERFAMILY PAH2 domain 36 106 IPR036600 GO:0006355
Accr9g01368 1422 MobiDBLite consensus disorder prediction 969 996 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 911 951 - -
Accr9g01368 1422 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Accr9g01368 1422 MobiDBLite consensus disorder prediction 223 286 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 431 465 - -
Accr9g01368 1422 MobiDBLite consensus disorder prediction 851 865 - -
Accr9g01368 1422 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Accr9g01368 1422 FunFam Paired amphipathic helix protein SIN3 337 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01368 Accr-Chr9 19419728 19430811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01368 33 142 WRKY Transcription Factor Family AT4G12020 50.909 2.70e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr9g01368 Sin3a_C 2.8e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01368 K11644 - mnt:21394293 2052.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01368 9 19419728 19430811 Accr10g01287 10 35589296 35598391 CCT
Accr9g01368 9 19419728 19430811 Accr9g01368 9 19419728 19430811 ECH