Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01300 ATGGCGCACGCTGCTCGACTCCCCTGCGATTGTGACGGTGTCTGTATGATCTGCAAGGCAAAGCCCGCAGAGGAAGAAAAACTGACATGCAAAACCTGTGTTTCTCAATGGCATGTCAACTGCCTCTCTCACCGTCCGGAGACGATGGCGGAGACGCTTCAGTGGGAATGCCCTGATTGTTCTTCCCCACCTTCCGATTTCCCCTCGGCGACCGTTGGCAAAGTCGTCCTTGATGGTGCCGGTGACTTGATGGTGAAGATCCGTGCGATTGAGGCCGATGATTCTTTGAGTGAGCTTGAAAAGGCTAAGAAGCGCCAAGAACTCTTGAGTGGAAAGGCTGGCCTGGAGGGAGACGAAAGTGGTGGGAAGAAGACGGTGGAAGGTGGAGGGAAGGATGTGTTGGATATTCTTAGCGGGACTCTGAATTGCTCCTTCTGTATGCAGCTACCCGAGAGGCCGGTCACGACTCCATGTGGCCACAACTTCTGCTTGAAGTGCTTTCAAAAGTGGATTGGGCAAGGAAAACTAACATGTGCCAAGTGCCGCAGTGCTATCCCTTCCAAAATGGCAAGTCAACCACGTATAAATGCTTCACTCGTTACTGCTATCCGTATGGCCAAAATATCAAAAAACATAGGTACAGGAGAAACCTCTAGAGTTTATCATTTTGTGCATAACCAAGATAGGCCAGACAAGGCTTATATGTCAGAGCGGGCCCAAAGGAAGGGCAAATCAAATGCTTGCAGTGGAAAGATTTTTGTAACTGTGCCTCAGGATCACTTTGGTCCAATCCCAGCTGAGAATGATCCAGTGAGGAATCAAGGTGTGCTGGTTGGTGAATGCTGGGAAGATAGACTTGAATGCCGGCAATGGGGCGTTCACTTCCCTCATGTTAGTGGTATTGCTGGACAATCAAACTATGGTGCACAATCAGTAGTTCTTTCGGGCGGTTATGAAGATGATGAGGATCATGGAGAGTATTTCCTTTATACTGGAAGCGGTGGTAGAGATTTAAGTGGAAACAAGCGAACAAACAAATTACAATCATTTGATCAGAAGTTTGAAAAGTACAACTTAGCCTTAAAAGTTAGCTGTTTAAAAGGTTATCCAGTTCGAGTTGTAAGATCTCACAAGGAGAAGCGATCCTCGTATGCCCCTGAGAAAGGATTGCGTTATGATGGTGTATACAGAATTGAAAAGTGTTGGCGGAAACAAGGAATGCAGGGCTTCAAAGTTTGTCGCTACTTATTTGTTAGATGTGACAATGAACCTGCCCCATGGACAAGTGATGAACATGGAGATCGACTCCGAGAATTGCCAGTAATTCCTGAGCTGAAAAAGGCCACAGACTTGGTTGAAAGGAAGGGGAATCCATCATGGGATTTTGATGTGAAAGAATCTTGTTGGAAGTGGAAAATACCACATCCTCCCAGTCAAAAGCATGTAAAAAGTGCTGACCCTGATGAGGTAAAAAGATCGAGGCGGGAAATCAGGAAGGCCCAAAATCTTTCAATCAAGGAAAGACTGCTCAAAGGATTCGGTTGCCTTATCTGTAAAGAGGTTATGGCTGCTCCTGTGACAACACCTTGTGCACATAACTTTTGTAAGTCATGTTTGGAGGGTGCCTTTGCGGGTAAGTCTTTCGTGAGAGAAAGAAGCAAGGGTGGAAGATCTCTGCGGTCCCAAAAGAACATAATGAATTGCCCTTGTTGCCCTACTGACATTTCTGATTTTCTTCAGAACGTTCAGGTCAATACAGAATTGTTGGGCTTAATTGAATCACTGAAGGCTGAGGCGGCTGAAGAAAACGGAAATGGAAGTGAGGATGAAAATGGAGCAGAGGAAGACAAGGATGATGCTGAGGCTTCAATGGATGGAGATAAGGATACTTCGGTTGAGAAGCTCAATGATTCAGCGGAGGAATCTGAAGAGACAAAGAAAGGCGGAGTGACCAATTGTGCAGCCAAAGATAATTGCAAAAGAAAGAGAGCCGATGCCAAAGGAGTTTCTCCCAAACGTGGCAAAACTAAAAAGGCTGAGGATGATGGAAATGATTCACCAGCAAGTCCTCTTCATTTGTCATCAGACCATTAA 2094 0.4589 MAHAARLPCDCDGVCMICKAKPAEEEKLTCKTCVSQWHVNCLSHRPETMAETLQWECPDCSSPPSDFPSATVGKVVLDGAGDLMVKIRAIEADDSLSELEKAKKRQELLSGKAGLEGDESGGKKTVEGGGKDVLDILSGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKLTCAKCRSAIPSKMASQPRINASLVTAIRMAKISKNIGTGETSRVYHFVHNQDRPDKAYMSERAQRKGKSNACSGKIFVTVPQDHFGPIPAENDPVRNQGVLVGECWEDRLECRQWGVHFPHVSGIAGQSNYGAQSVVLSGGYEDDEDHGEYFLYTGSGGRDLSGNKRTNKLQSFDQKFEKYNLALKVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKQGMQGFKVCRYLFVRCDNEPAPWTSDEHGDRLRELPVIPELKKATDLVERKGNPSWDFDVKESCWKWKIPHPPSQKHVKSADPDEVKRSRREIRKAQNLSIKERLLKGFGCLICKEVMAAPVTTPCAHNFCKSCLEGAFAGKSFVRERSKGGRSLRSQKNIMNCPCCPTDISDFLQNVQVNTELLGLIESLKAEAAEENGNGSEDENGAEEDKDDAEASMDGDKDTSVEKLNDSAEESEETKKGGVTNCAAKDNCKRKRADAKGVSPKRGKTKKAEDDGNDSPASPLHLSSDH 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01300 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 624 IPR013083 -
Accr9g01300 697 SUPERFAMILY RING/U-box 509 597 - -
Accr9g01300 697 ProSiteProfiles Zinc finger RING-type profile. 515 571 IPR001841 -
Accr9g01300 697 SUPERFAMILY RING/U-box 135 203 - -
Accr9g01300 697 MobiDBLite consensus disorder prediction 656 685 - -
Accr9g01300 697 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Accr9g01300 697 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Accr9g01300 697 Gene3D - 242 441 IPR036987 -
Accr9g01300 697 SMART PHD_3 14 61 IPR001965 -
Accr9g01300 697 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Accr9g01300 697 MobiDBLite consensus disorder prediction 604 622 - -
Accr9g01300 697 Pfam RING-type zinc-finger 515 555 IPR027370 -
Accr9g01300 697 Pfam SAD/SRA domain 273 422 IPR003105 -
Accr9g01300 697 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Accr9g01300 697 ProSitePatterns Zinc finger RING-type signature. 530 539 IPR017907 -
Accr9g01300 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 209 IPR013083 -
Accr9g01300 697 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 89 210 - -
Accr9g01300 697 MobiDBLite consensus disorder prediction 599 697 - -
Accr9g01300 697 MobiDBLite consensus disorder prediction 623 647 - -
Accr9g01300 697 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 609 IPR045134 -
Accr9g01300 697 CDD RING-HC_ORTHRUS_rpt1 141 186 IPR047498 -
Accr9g01300 697 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Accr9g01300 697 SMART G9a_1 266 423 IPR003105 -
Accr9g01300 697 SMART ring_2 515 571 IPR001841 -
Accr9g01300 697 SMART ring_2 143 181 IPR001841 -
Accr9g01300 697 SMART ring_2 15 60 IPR001841 -
Accr9g01300 697 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Accr9g01300 697 SUPERFAMILY PUA domain-like 245 440 IPR015947 -
Accr9g01300 697 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 437 - -
Accr9g01300 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01300 Accr-Chr9 17303882 17308323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01300 1 605 C2H2 Transcription Factor Family AT5G39550 60.427 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01300 K10638 - qsa:O6P43_017375 970.304