Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01285 ATGATCCGAAAATCAAATGAGTCCGATCGCCGGATTCTGACTTTCCCGGCGGTTCATCCTTATGAGGGTGTTTCTCTTCCCACGCTCATCACTTCTCTATTCACCATTTCTCGTCGGATTTGCAGTTTCAAATCCAAAGTTTTCTCCAGTAACAAGAAAAATGCCAGAAAAGCCATTCGTATGATCGAGGTTCTTCAGATTTTTCTGGAAGAGATCCGATACCAACAATGGAGTTTTCCGGATTCTGTAATCCTGAGCTTGTCGGAGCTCCATTTGACTTTCCAGAAGCTTCAGTTCCTCCTTGAAGACTGCACTCAAGAAGACTCTCGGCTATATATGCTCATGGAGTCGGATTGGGTCGCGACCCATTTCCAGGTCCTATCCAGATCCATAGTCACAGCTCTGGATGTCTTCCCTTTCAATTCCACAGAAATTTCGGAAGAAGTTAAAGAACACGTTGATCTGATGCTGAAGCAAGCAAGAAAGTGCAACTTTGAAGTTGAGCCTGAAGATAAACGAGCAATGATGGGTGTTCTATCAATTTTGAATCAATTTGAGAACTCTGTCACCCCAAGTGAGAGTGATCTCAGATGGATTCTTGATCATATTGGGGTTCAAAGATGGAGTGAGTGTAACAAAGAGATCAAATTTTTGGATGCAGAGATTGGGTATGAGCGAATGAAGGAAGAGAAAAGAAAGCTGGCTTTTTTATGTAGTTTAATGGGGTTCATAAGTTATTGCAGATGCGTGGTGATCGGGGTGGTCGATGATGGAGAAGATGAATCAAAATCTGATTATGGTAAAGAAAGTGAGATTCAGACTGGGTTCTTCAACCCAGATGATTTTCGATGTCCAATCTCTCTAGAAATCATGAATGATCCAGTGACGATAGAGACGGGTCATACTTATGATCGATCTTCGATTCTCAGATGGTTCAGCAGCAGTGGAAGTCTCAAATGCCCCAAGACAGGGAGAAACCTTAGTAGCATCGAACTGGTCCCTAATTTGGTGCTTCGAAGGCTAATTCATCAATACTGCTCTAAACCAGGTGTTCCCGTGACTGATCTGGGTCAAAGAAATCGTGGTGATCGTGACAACAGAACAACCTGTCAGCCTGGAAGTTTGGCAGCTCAAGAAGCCATGAGAATGCTGGCGAGTTTCCTCACTGACAAGCTTCAAAGCAAAGCCGAGGTTGAGAGAAACAGAGCTGCTTACGAGATTCGGGTTCTTGCGAAAAGAAACATCTTCAACAGGTCTTGTTTGGCGGAATCTGGTACAATATCGTGTCTGTTAAGGTTGTTGTCCTCAAAGAATCCAACAACACAAGAAAATGCCATAGCAGCTCTTATGAACCTCTCAAAACACCCCAAGAGCCGAAGCATTATGGTTCTGAATGGAGGTTTGGAACTGATAGTGAGTGTTTGTAAGAAAGGAATGAAGTTAGAATCTCACCGTCACGCTGCTGCCACGATGTATTACCTCGCTTCCGACGAGGAGAATCGGAAATTGATCGGGAAAGAGCCAGAAGCAATCCCATCTTTGATCAAACTACTCAAAGATGGCTCTGATAGAGGCAAAAAGAATGGCCTGGTTGCTATATATGGCCTCCTTTTCCACTCTGAAAATCACAAGAGAGTCCTTGAAGCTAAGGAAATTCTTCCATTACTAGTTAGCATCATAAAAACCTGTGAAAGAGAAGAGCTAGTCACAGATTCACTAGCAGTACTGGCAACTCTAGCAGAGAAAAGCGTTGGAGCAATGGCAATACTTAAAAATGGAGAAGCTTTAAATCCAGCCATGGAAATTTTGAACTCTTCTTCAACTTCAAGAGTTGGCAAAGAGCAATGTGTGGCTTTATTGCTTTCTCTAGCAGCAAATGGAGGGGAAAATGTGATTGCTCTTCTAGTGAAAAGCCCTTCTTTAATGGGATCCTTATATTCCTTACTCAGTGAAGGCACGTTTAGAGCAAGCAAGAAGGCCAGTGCTCTCATTAGGGTCCTCCATGATTTTTGTGAAAGGAGGCACTCTGGATTCAAAGTTCCAGTTCTTCCACAAGAACAATTTATTCATGTTTGGTAA 2079 0.4295 MIRKSNESDRRILTFPAVHPYEGVSLPTLITSLFTISRRICSFKSKVFSSNKKNARKAIRMIEVLQIFLEEIRYQQWSFPDSVILSLSELHLTFQKLQFLLEDCTQEDSRLYMLMESDWVATHFQVLSRSIVTALDVFPFNSTEISEEVKEHVDLMLKQARKCNFEVEPEDKRAMMGVLSILNQFENSVTPSESDLRWILDHIGVQRWSECNKEIKFLDAEIGYERMKEEKRKLAFLCSLMGFISYCRCVVIGVVDDGEDESKSDYGKESEIQTGFFNPDDFRCPISLEIMNDPVTIETGHTYDRSSILRWFSSSGSLKCPKTGRNLSSIELVPNLVLRRLIHQYCSKPGVPVTDLGQRNRGDRDNRTTCQPGSLAAQEAMRMLASFLTDKLQSKAEVERNRAAYEIRVLAKRNIFNRSCLAESGTISCLLRLLSSKNPTTQENAIAALMNLSKHPKSRSIMVLNGGLELIVSVCKKGMKLESHRHAAATMYYLASDEENRKLIGKEPEAIPSLIKLLKDGSDRGKKNGLVAIYGLLFHSENHKRVLEAKEILPLLVSIIKTCEREELVTDSLAVLATLAEKSVGAMAILKNGEALNPAMEILNSSSTSRVGKEQCVALLLSLAANGGENVIALLVKSPSLMGSLYSLLSEGTFRASKKASALIRVLHDFCERRHSGFKVPVLPQEQFIHVW 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01285 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Accr9g01285 692 Pfam Armadillo/beta-catenin-like repeat 417 453 IPR000225 GO:0005515
Accr9g01285 692 ProSiteProfiles U-box domain profile. 277 352 IPR003613 GO:0004842|GO:0016567
Accr9g01285 692 Pfam U-box domain 279 347 IPR003613 GO:0004842|GO:0016567
Accr9g01285 692 SUPERFAMILY RING/U-box 279 353 - -
Accr9g01285 692 PANTHER U BOX DOMAIN-CONTAINING 50 667 - -
Accr9g01285 692 SMART arm_5 539 581 IPR000225 GO:0005515
Accr9g01285 692 SMART arm_5 497 538 IPR000225 GO:0005515
Accr9g01285 692 SMART arm_5 455 496 IPR000225 GO:0005515
Accr9g01285 692 SMART arm_5 413 454 IPR000225 GO:0005515
Accr9g01285 692 CDD RING-Ubox_PUB 279 332 IPR045210 -
Accr9g01285 692 SMART Ubox_2 281 345 IPR003613 GO:0004842|GO:0016567
Accr9g01285 692 SUPERFAMILY ARM repeat 386 667 IPR016024 -
Accr9g01285 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Accr9g01285 692 FunFam RING-type E3 ubiquitin transferase 278 351 - -
Accr9g01285 692 Gene3D - 359 677 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01285 Accr-Chr9 16917564 16919642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01285 1 692 U-box Gene Family AT1G60190 44.872 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01285 - - gmx:100795816 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01285 9 16917564 16919642 Accr9g01285 9 16917564 16919642 ECH