Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01257 ATGCAGATCTTCGTGAAGACTTTGATGGGAAAGACCATCACTCTCGAGGTTGAGAGCAGTTACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTTGCTGATTATAACATCCAAAAGGAATCAACGTTTCACTCTCGAGGTTGA 216 0.4537 MQIFVKTLMGKTITLEVESSYTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTFHSRG 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01257 71 FunFam Polyubiquitin 1 70 - -
Accr9g01257 71 PRINTS Ubiquitin signature 11 31 IPR019956 -
Accr9g01257 71 PRINTS Ubiquitin signature 32 52 IPR019956 -
Accr9g01257 71 PRINTS Ubiquitin signature 53 71 IPR019956 -
Accr9g01257 71 ProSiteProfiles Ubiquitin domain profile. 1 68 IPR000626 GO:0005515
Accr9g01257 71 PANTHER UBIQUITIN 1 68 - -
Accr9g01257 71 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Accr9g01257 71 SUPERFAMILY Ubiquitin-like 1 68 IPR029071 -
Accr9g01257 71 Gene3D - 1 69 - -
Accr9g01257 71 SMART ubq_7 1 70 IPR000626 GO:0005515
Accr9g01257 71 Pfam Ubiquitin family 3 68 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01257 Accr-Chr9 16486992 16487758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01257 1 68 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 95.588 6.57e-43 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01257 - K08770 shis:125191601 129.413