Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01254 ATGGCAGGCCTGGAGGTAGCAGCAGTGGAGGGATTCAGAACCTTGACTGAGACTAAAGCTTGGGACTATGTGGTAGTATGGAAGTATGGCGATGACCCAACAAGATTTATCGAGTGGATGGGCTGTTGCTGTGTTGGGGCATGTAATGGGAGCAAAAATGAAGAGGAAAAGGAGGAAGAATATAAATTGAGTCGCAGATGTAGGGATAGTCACTTTCAGCATCCAGTGAGAACCAAGGGTTGTGAGGCTCTTGCTCTACTTCCTTATACAATACCACTTTATTCTGGTGTTCATGGAGATGTGGCAATATCAAAACAACCTCAATGGCTTATCCAGGGTTCAACAGGAACTCAAATTTTGATCCCTATTATTGGTGGTATTATAGAGCTCTTCTCAGCAAAGATTGTGCCAAAAGATTCAAGGATCATAGAGTCGATAACTGCACATTGTTGTCTCTCTATGAAAAATGAGGCCATCTCTGAACATCCACCACTAGATTCATGCTATCCACAAAGCTTAATTTCTAGCATACAGGCACCGGCAGTAGAGCTGTCTCATCCAAGCATTGAAGGATCCTCCAGTGGATCAAATCCTTCAAATGAGACTTCAAAAGAGCATCAAACAGGTTTCGATTTCCAGTGTGGCACTCTGGAAGAAGATAAACCAGAGTTGGTCAAGAGACCTCAAAGGGAAGGCTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATCAAAGATGGGCTTTACACTCTACGAGCTTTGGTCCCAAAGATAACCAAGATGGATAGGGCATCCATTGTTGGAGATGCCATTGATTATATAAAGGAACTGCAGGAACAAGAAAAAGGACTTAGAGATGAGTTGACAGCTTTGGAAGAAGAGAATTGTGAAAAGGACAAACCACAGTCAAGGAGGTCAATATTAAAGGCACAAGGAGGAACCAGAAGTTTGCATCTTGATCATCTCATCCAAAGTTCCTCTGATTCCACCAAAAGGACCCAGATGGAGGTGCAGGTTGAAGTGAACCAGATTGGGAAAATAGAGTTTCTTGTGAAGATGCGTTGTGAGCAGAAGAGAGGAGGGTTTGCAAGATTGATGGAGGCTATTGATTTGTTTGGACTGCAGGTAACTGATGCTAATGTGAACACATTTGGTGACAAAGTCATGAATATTCTGACTGTTAAGGCAAACAAGCTTGATATTCACCCAGACATATTGAGAGAGTATTTAACTCAGCAAGCTGATTCTCAAGAAAGAGGAGTTGATGTTGAGGTCAAGAAAGCTTAG 1299 0.4234 MAGLEVAAVEGFRTLTETKAWDYVVVWKYGDDPTRFIEWMGCCCVGACNGSKNEEEKEEEYKLSRRCRDSHFQHPVRTKGCEALALLPYTIPLYSGVHGDVAISKQPQWLIQGSTGTQILIPIIGGIIELFSAKIVPKDSRIIESITAHCCLSMKNEAISEHPPLDSCYPQSLISSIQAPAVELSHPSIEGSSSGSNPSNETSKEHQTGFDFQCGTLEEDKPELVKRPQREGYTSKNLVTERNRRNKIKDGLYTLRALVPKITKMDRASIVGDAIDYIKELQEQEKGLRDELTALEEENCEKDKPQSRRSILKAQGGTRSLHLDHLIQSSSDSTKRTQMEVQVEVNQIGKIEFLVKMRCEQKRGGFARLMEAIDLFGLQVTDANVNTFGDKVMNILTVKANKLDIHPDILREYLTQQADSQERGVDVEVKKA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01254 432 Gene3D - 226 299 IPR036638 GO:0046983
Accr9g01254 432 Coils Coil 278 298 - -
Accr9g01254 432 CDD bHLH_AtAMS_like 235 306 - -
Accr9g01254 432 CDD ACT_UUR-ACR-like 354 398 - -
Accr9g01254 432 MobiDBLite consensus disorder prediction 185 207 - -
Accr9g01254 432 Pfam Helix-loop-helix DNA-binding domain 240 282 IPR011598 GO:0046983
Accr9g01254 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 298 IPR036638 GO:0046983
Accr9g01254 432 SMART finulus 238 287 IPR011598 GO:0046983
Accr9g01254 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Accr9g01254 432 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 147 IPR025610 -
Accr9g01254 432 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01254 Accr-Chr9 16440298 16442389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01254 91 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 31.073 4.42e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr9g01254 bHLH-MYC_N 9.1e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01254 - - pcin:129321737 627.861