Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01210 ATGGGAATTATCAGTTCGATTTTCTGGCTTCTGGGTTTGTTGCTTCTGGCTTTATCAGAGATTTCTTCTGCCGCTCTTTCTCCTTCAGGAGTAAACTATGAAGTTGTTGCTCTGATTGCCATAAAGAATGATTTGGTTGATCCCCACAACGTCCTGGATGGTTGGGATATTAATTCTGTTGACCCTTGTAGCTGGAGGATGGTTACTTGTTCTCCAGATGGCTACGTGTCTGCTTTGGGATTGCCTAGTCAGAACTTGTCTGGTACGCTGTCTGCTGGAATTGAAAACTTAACAAACTTACAGTCTGTGTTGCTTCAGAACAATGGCATTTCTGGTTCAATTCCTCCTGGGATAGGAAATCTGGAAAAGCTTCAGACACTTGATCTTTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGGCTTGAGAGCCTGAATTATCTGCGGTTAAACAATAACAGCTTGACAGGAGTCTGCCCTCAGTCCCTTGGAAACGTTAAAGGCCTAACCCTTGTGGACCTCTCTTATAACAATCTGAGTGGTCCGTTGCCAAGAATATCTGCAAGAACATTCAAGATTGTGGGTAACCCTTTGATTTGTGGTCCAACTGCTAATAACTGTTCAACTGTTTTGCCTGAGCCCCTTTCCTTCCCTCCAGATGCTATGAGAGACTCTGTAAGAAGAAGCCAACATGTAGCAATAGCTTTTGGCGCAAGTTTTGGTGGTGCTTTTGTCGTTGTGATTATTATTGGGTTCCTTGTTTGGTGGCAGTATAGACGCAACCAGCAGATATTCTTTGATGTTAATGAGCAATACGATCCAGAGGTACGCCTTGGTCATTTAAAAAGATACTCATTCAAAGAGCTTCGAGCTGCAACAGACCATTTCAGTTCAAGGAACATTCTGGGAAGAGGCGGCTTTGGAATAGTCTACAAAGGGCTCTTGAATGATGGATCTATAGTGGCAGTTAAAAGGTTAAAAGACTATAATGCTGCTGCTGGAGAGATCCAATTTCACACCGAAGTTGAGACTATAAGTTTGGCCGTCCACCGTAATCTTCTCAGGCTTTGTGGGTTTTGCAGTACTCAGAATGAAAGGCTTCTTGTCTATCCATACATGCCTAATGGCAGCGTAGCCTCTCGATTGAAAGATCATATACGTGGTGAGCCAGCTTTAGATTGGGTGAGGCGAAAGAGAATAGCGTTAGGTACAGCAAGAGGGTTGGTTTATTTGCATGAGCAATGTGATCCTAAGATAATACACCGAGATGTTAAAGCCGCCAACATATTGCTGGATGAAGACTTTGAAGCAGTAGTTGGTGATTTTGGTCTGGCGAAGCTTCTGGATCACAGAGATTCACATGTCACCACAGCGGTGCGTGGCACTGTTGGTCACATAGCTCCAGAATACTTATGTACAGGTCAGTCATCTGAAAAGACTGACGTGTTTGGGTTCGGAATCTTGCTTCTTGAACTCATCACAGGTCACAAGGCTTTGGATTTTGGACGAGCTGCTAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTGCATCAAGAAAGAAGATTAACACAAATGGTGGATAAGGATTTGAATGGAGACTTTGACCTGATTGAACTGGAAGAAATGGTTCAGGTTGCACTATTGTGTACACAGTTCAATCCTTCTCAACGTCCCAAGATGTCTGAAGTATTGAAGATGCTGGAAGGAGATGGTTTAGCAGAAAGATGGGAAGCTTCACCGAAGCTTGATTCATCAAAGTTCAGGTGCTGTGATAACCCTACTCAGAGATATTCAGATTTTATAGAAGACTCTTCACTTATAGTAGAAGCTATGGAGCTTTCTGGGCCTAGGTGA 1869 0.4329 MGIISSIFWLLGLLLLALSEISSAALSPSGVNYEVVALIAIKNDLVDPHNVLDGWDINSVDPCSWRMVTCSPDGYVSALGLPSQNLSGTLSAGIENLTNLQSVLLQNNGISGSIPPGIGNLEKLQTLDLSNNAFSGEIPSSLGGLESLNYLRLNNNSLTGVCPQSLGNVKGLTLVDLSYNNLSGPLPRISARTFKIVGNPLICGPTANNCSTVLPEPLSFPPDAMRDSVRRSQHVAIAFGASFGGAFVVVIIIGFLVWWQYRRNQQIFFDVNEQYDPEVRLGHLKRYSFKELRAATDHFSSRNILGRGGFGIVYKGLLNDGSIVAVKRLKDYNAAAGEIQFHTEVETISLAVHRNLLRLCGFCSTQNERLLVYPYMPNGSVASRLKDHIRGEPALDWVRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLCTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQERRLTQMVDKDLNGDFDLIELEEMVQVALLCTQFNPSQRPKMSEVLKMLEGDGLAERWEASPKLDSSKFRCCDNPTQRYSDFIEDSSLIVEAMELSGPR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01210 622 SMART LRR_typ_2 121 144 IPR003591 -
Accr9g01210 622 SMART LRR_typ_2 145 168 IPR003591 -
Accr9g01210 622 SMART LRR_typ_2 97 120 IPR003591 -
Accr9g01210 622 FunFam Somatic embryogenesis receptor-like kinase 1 376 592 - -
Accr9g01210 622 FunFam Somatic embryogenesis receptor kinase 1 268 375 - -
Accr9g01210 622 Pfam Protein kinase domain 301 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g01210 622 ProSiteProfiles Protein kinase domain profile. 299 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g01210 622 SMART serkin_6 299 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g01210 622 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Accr9g01210 622 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Accr9g01210 622 SUPERFAMILY Protein kinase-like (PK-like) 276 573 IPR011009 -
Accr9g01210 622 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Accr9g01210 622 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Accr9g01210 622 Gene3D Transferase(Phosphotransferase) domain 1 376 591 - -
Accr9g01210 622 Gene3D Phosphorylase Kinase; domain 1 268 375 - -
Accr9g01210 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 583 - -
Accr9g01210 622 SUPERFAMILY L domain-like 32 193 - -
Accr9g01210 622 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Accr9g01210 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01210 Accr-Chr9 15650482 15653830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01210 67 622 Receptor kinase-like Gene Family AT1G60800 75.000 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Accr9g01210 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01210 - - gmx:100806943 1055.43