Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01208 ATGGAGGAAATGTACGATCTCTCGTCCTTCCCTGTAGATTTTTCCGACAAAGCCATCATGTCGCCGGAGAATCTGATATTCCCCGCCGACTACCAGAGCTTCCTCATGTCTTCCTCCGCCGCTGCCACACCACCTGGCTTTCATGATCGAATTTTAGGATCTGATGAGTTGCTTTCCGCTGCATCCGCGACTACGGAAGCCGAAGCCTCCGGCGCTGCTGCTCCGGAATTTCGGCCACAAGAGGATGATGACTCTTTCTCCGTCATCAAAGCTAGAATTGCATCTCATCCTCACTATCCTCGTCTTATTCAAGCCTATATCGATTGCCAGAAGGTAGGAGCACCACCAGAAATAGCGTGTTTGTTAGGAGAAATCCAGCGAGAAAACGACGTTAGCAAGAGGGATGTTATTTCCATGTGCTATGGAGACGACCCCGAGCTCGACGAGTTCATGGAAACCTACTGCCACGTGCTGTTGAAGTATAAATCAGATCTTGCTCGGCCTTTTAATGAAGCAACCTCTTTCCTCAACCAGATCGAAACCCAGCTCAGTTATCTCTGTGCCGGGACTTCCGTCCTAAGCCTTTCCGATGATAGGGGTGTGTCTTCGGGAGAAGATTTCAGTACTATTGAAGGTGGAGACGCTGAAGCCAAGAGTGAAGAGCAAGAGCTTAAGGACAGTCTTCTACGTAAGTTTGGGGATCGTATTGGCTCTTTGAAGTCGGAATTCTCTAAAAAGAAGAAGAAAGGTAAGCTTCCCAAAGAAGCCAGTCAGGCTCTGTTTCAGTGGTGGACTGCTCATTACAACTGGCCATACCCAACGGACTCTGATAAGATAGCTCTGGCCAAGTCAACGGGTCTAGACCCGAAGCAAATAAACAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAGCCATCTGAAAACATGACCGACCAATTTTCTGCCATTGATGATCTTACTGGACGGTTTTTCAGTGATGAATAA 987 0.4772 MEEMYDLSSFPVDFSDKAIMSPENLIFPADYQSFLMSSSAAATPPGFHDRILGSDELLSAASATTEAEASGAAAPEFRPQEDDDSFSVIKARIASHPHYPRLIQAYIDCQKVGAPPEIACLLGEIQRENDVSKRDVISMCYGDDPELDEFMETYCHVLLKYKSDLARPFNEATSFLNQIETQLSYLCAGTSVLSLSDDRGVSSGEDFSTIEGGDAEAKSEEQELKDSLLRKFGDRIGSLKSEFSKKKKKGKLPKEASQALFQWWTAHYNWPYPTDSDKIALAKSTGLDPKQINNWFINQRKRHWKPSENMTDQFSAIDDLTGRFFSDE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01208 328 Pfam ELK domain 223 244 IPR005539 GO:0003677
Accr9g01208 328 CDD homeodomain 258 307 IPR001356 GO:0003677
Accr9g01208 328 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Accr9g01208 328 SMART ELK_2 223 244 IPR005539 GO:0003677
Accr9g01208 328 SUPERFAMILY Homeodomain-like 244 312 IPR009057 -
Accr9g01208 328 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
Accr9g01208 328 SMART KNOX1_2 87 131 IPR005540 GO:0003677|GO:0005634
Accr9g01208 328 Pfam KNOX2 domain 141 187 IPR005541 GO:0003677|GO:0005634
Accr9g01208 328 Gene3D - 240 316 - -
Accr9g01208 328 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981|GO:0006355
Accr9g01208 328 SMART HOX_1 245 310 IPR001356 GO:0003677
Accr9g01208 328 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 312 - -
Accr9g01208 328 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677
Accr9g01208 328 MobiDBLite consensus disorder prediction 199 222 - -
Accr9g01208 328 SMART KNOX2_2 137 188 IPR005541 GO:0003677|GO:0005634
Accr9g01208 328 Pfam KNOX1 domain 89 130 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01208 Accr-Chr9 15510974 15520119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01208 1 328 Homeobox Transcription Factor Family AT1G23380 60.294 5.14e-131 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr9g01208 KNOX2 7.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01208 - - gmx:100803730 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01208 9 15510974 15520119 Accr10g01388 10 37061834 37067927 CCT
Accr9g01208 9 15510974 15520119 Accr9g01208 9 15510974 15520119 ECH