Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01207 ATGGAGGAAATGTACGATCTCTCGTCCTTCCCTGTAGATTTTTCCGACAAAGCCATCATGTCGCCGGAGAATCTGATATTCCCCGCCCACTACCAGAGCTTCCTTATGTCTTCCTCCGCCGCCGCCGCACCACCTGGCTTTCATGATCGAATTTTAGGATCTGATGAGTTGCTTTCCGCTGCATCTGCGACTACGGAAGCCGAAGCCGAAGCCGCCGGCGCGGCTGCTCCGGAATTTCGGCCACAAGAGGGTGACTACTCTTTTTCCGTCGTCAAAGCTAGAATTGCATCTCATCCTCACTATCATCGTCTCATTCAAGCCTATATCGATTCCCAGAAGGTAGGAGCACCACCAGAAATAGCGTGTTTGTTAGGAGAAATCCAACGAGAAAACGATGTTAGCAAGAGGGATGTTATTTCCATCTGCTATGGAGACGACCCCGAGCTTGACGAGTTCATGGAAACCTACTGCCACGTGCTGTTGAAGTATAAATCAGATCTTGCTCGGCCTTTTAATGAAGCAACCTCTTTCCTCAACCAGATCGAAACCCAGCTCAGTTATCTCTGTGCCGGGGCTTCCGTCCTAAGCCTTTCCGATGATAGGGGTGTGTCTTCGGAAGAAGATTTCAGTACTATTGAAGGTGGAGACGCTGAAGCCAAGAGTGAAGAGCAAGAGCTTAAGGACAGTCTTCTACGTAAGTTTGGGGATCGTATTGGCTCTTTGAAGTTGGAATTCTCTAAAAAGAAGAAGAAAGGTAAGCTTCCGAAAGAAGCCATTCAGGCTCTGTTTCAGTGGTGGACCGCTCACTACAACTGGCCATACCCAACGGACTCTGATAAGATAGCTCTGGCCAAGTCAACTGGTCTACACCAGAAGCAAATAAACAATTGGTTTATTAATCAGAGAAAACGCCACTGGAAGCCATCTGAAACCATGAGCGCCCAATTTTCTGCCATGGATGATCTTACTGGACGGTTTTTTAGTGATGAATAA 993 0.4773 MEEMYDLSSFPVDFSDKAIMSPENLIFPAHYQSFLMSSSAAAAPPGFHDRILGSDELLSAASATTEAEAEAAGAAAPEFRPQEGDYSFSVVKARIASHPHYHRLIQAYIDSQKVGAPPEIACLLGEIQRENDVSKRDVISICYGDDPELDEFMETYCHVLLKYKSDLARPFNEATSFLNQIETQLSYLCAGASVLSLSDDRGVSSEEDFSTIEGGDAEAKSEEQELKDSLLRKFGDRIGSLKLEFSKKKKKGKLPKEAIQALFQWWTAHYNWPYPTDSDKIALAKSTGLHQKQINNWFINQRKRHWKPSETMSAQFSAMDDLTGRFFSDE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01207 330 SMART HOX_1 247 312 IPR001356 GO:0003677
Accr9g01207 330 SMART KNOX1_2 89 133 IPR005540 GO:0003677|GO:0005634
Accr9g01207 330 SUPERFAMILY Homeodomain-like 246 316 IPR009057 -
Accr9g01207 330 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 315 - -
Accr9g01207 330 SMART KNOX2_2 139 190 IPR005541 GO:0003677|GO:0005634
Accr9g01207 330 Gene3D - 244 319 - -
Accr9g01207 330 ProSitePatterns 'Homeobox' domain signature. 283 306 IPR017970 GO:0000981|GO:0006355
Accr9g01207 330 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677|GO:0006355
Accr9g01207 330 Pfam KNOX2 domain 143 189 IPR005541 GO:0003677|GO:0005634
Accr9g01207 330 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677
Accr9g01207 330 ProSiteProfiles ELK domain profile. 225 245 IPR005539 GO:0003677
Accr9g01207 330 CDD homeodomain 257 309 IPR001356 GO:0003677
Accr9g01207 330 Pfam ELK domain 225 246 IPR005539 GO:0003677
Accr9g01207 330 SMART ELK_2 225 246 IPR005539 GO:0003677
Accr9g01207 330 Pfam KNOX1 domain 91 132 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01207 Accr-Chr9 15452064 15461836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01207 1 330 Homeobox Transcription Factor Family AT1G23380 58.772 4.24e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr9g01207 KNOX2 7.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01207 - - gmx:100803730 380.178