Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01142 ATGGCGAGGGACAAGATTCAGATTAAGAAGATCGACAACACTACGGCGAGGCAAGTTACGTTCTCCAAGCGACGCAGAGGACTCTTCAAAAAAGCTGAGGAGCTTTCTGTCCTCTGTGATGCCGATGTTGGCCTCATCGTCTTCTCCTCAGCTGGCAAGCTCTCTGAGTTCTCCAGCACCAGCATGAAGGAGATTCTTAACATGTATCATTTGCATTCGAAGAACCTATCAAAACAAGAACCACCGTCTCTTGAATTGCAGCTAGTTAAGAACAGTAATTACACCAACTTGAGCAAGGAAGTTGCTGAGAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAAGATCTGCAAGGTTTAAATATCCAGGATTTGCAGCAACTAGAGAGGTCTCTCGAATCTGGATTGCGCCGTGTAATAGAAATGAAGGAAGAGAAGATAATGACTGAGATCAGTGATCTCAAGAGAAAGGGAGTGGAATTGATGGAAGAAAATGAGCTGTTAAAGTGTCAAGTGGAACGATTAGCTGATGGCTTTAGGCAAGGTGGTTCCGCCGAGTCGGACGTCGTGAATAATGAGGAAGGCCAGTCATCGGAATCTGTCACTATCATCTGCAACTCCTCCGGACCCCCTCAAGATTACGACAGCTCTGACACATCGCTTAAGCTGGGGTTACCATATGCTGGCTGA 687 0.4658 MARDKIQIKKIDNTTARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSAGKLSEFSSTSMKEILNMYHLHSKNLSKQEPPSLELQLVKNSNYTNLSKEVAEKSRQLRQMRGEDLQGLNIQDLQQLERSLESGLRRVIEMKEEKIMTEISDLKRKGVELMEENELLKCQVERLADGFRQGGSAESDVVNNEEGQSSESVTIICNSSGPPQDYDSSDTSLKLGLPYAG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01142 228 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr9g01142 228 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr9g01142 228 FunFam Transcription factor, MADS-box 13 83 - -
Accr9g01142 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr9g01142 228 Coils Coil 124 144 - -
Accr9g01142 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Accr9g01142 228 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Accr9g01142 228 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Accr9g01142 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr9g01142 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr9g01142 228 Coils Coil 94 114 - -
Accr9g01142 228 Coils Coil 150 170 - -
Accr9g01142 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr9g01142 228 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Accr9g01142 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr9g01142 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr9g01142 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr9g01142 228 MobiDBLite consensus disorder prediction 181 228 - -
Accr9g01142 228 MobiDBLite consensus disorder prediction 184 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01142 Accr-Chr9 14013599 14018991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01142 1 228 MADS-box Gene Family AT2G22540 62.083 4.53e-100 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr9g01142 K-box 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01142 - - cill:122317082 322.398