Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01129 ATGGGTCGAAGAAAATTAGCAATGAAGACCCTTGAGAATAGGAATGCCCGCAGGGCGTTGTTTGAGAGGAGGAAGAAGGGATTATTGAGGAAGGCTTCTGAACTTTCCACGCTCTGTGGAATTAAAGCATGTGTGATAATTTTCCCTCCTCCAGATTCTGAAAATTCCAAAGCTGAAACCTTTCCTGAAGATCCCACACAAGTGATTCACAATATTCAGATGTATAACGCCAAGAAGAACTGCCCAGAGAAACAGAGGAAGAACTACGATCTCTGTGAGTTCTTTAATGATAGGAAGAACCAGGTTGAAGCTGAGACCTCCAGAGTTCGTAAACAAAAACTCAAGATGCTATGTCCAACGGACGACAGCTTCCACAACCTGGGAGAGGATCAACTGAGGATGTTAATTTCTACGCTGGATTCTAAAATTCAAGATTGTGATCATACAATTGGGCTGTTAAAGGCAAAGAAATCAGAGATGCCTGTGGTTCCAATGGGTTTGGACCTGTTGGATTATCTTGTGCAGAATACGAGTGACCTTGTGCAGAATACGAGTGACGAAGCCAATGCTTTCTCTCCTTCAGATCCAATGATGCAGCTTGTTGGTGGTAACAACACTGATTTCATGGATGATCAGGAACTTGGTTTTGGATTAGAGAATATTGATTTAGATATTTTTTTGGGTTTAGAGTGGGATTAG 699 0.4192 MGRRKLAMKTLENRNARRALFERRKKGLLRKASELSTLCGIKACVIIFPPPDSENSKAETFPEDPTQVIHNIQMYNAKKNCPEKQRKNYDLCEFFNDRKNQVEAETSRVRKQKLKMLCPTDDSFHNLGEDQLRMLISTLDSKIQDCDHTIGLLKAKKSEMPVVPMGLDLLDYLVQNTSDLVQNTSDEANAFSPSDPMMQLVGGNNTDFMDDQELGFGLENIDLDIFLGLEWD 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01129 232 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Accr9g01129 232 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Accr9g01129 232 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Accr9g01129 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Accr9g01129 232 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Accr9g01129 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr9g01129 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 61 IPR002100 GO:0003677|GO:0046983
Accr9g01129 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr9g01129 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr9g01129 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01129 Accr-Chr9 13924489 13925187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01129 1 74 Type I MADS-box Gene Family AT3G05860 42.105 2.45e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr9g01129 SRF-TF 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01129 - - pcin:129304854 291.967