Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01080 ATGGGCAGAGGGAAGATTGAGATCCGAAGGATCGATAATTCAACGAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAAGGGATTGATCAAGAAGGCCAAAGAGTTAACAATCCTGTGTGATGCACAAGTTGGACTCGTCATATTCTCCAGCACTGGAAAGCTTTATGAATATTCAAACACCAGCATGAAATCAGTGATAGAGAGGTATAACACAAGCAAGGAGGAACACCAGCAACTGCTTAATCCAAATTCAGAAGCCAAGTTTTGGCAAAGGGAGGCAGAAGTATTAAGGCATCAACTACAGACGCTACAAGGAAACCATCGGCAAATGATGGGAGAACAGCTTTCTGGTTTAAGTGTGAAAAATCTACAAGATCTGGAGAACCAGCTGGAAATGAGTGTCAGATGTATTCGCATGAAAAAGGAACAGATTCTAACAGAAGAAATCCAAGAGCTGAATCAAAAGGGAAACAGTATACATCAGGAAAACCTGGAACTCTATAAGAAGGTTTATGGCACATCAGAAATGGCAGCTACAAGCAGAGATGCATTCAATCCATACGGATTTCATACCAGTGAGGACCCACAAGAACTGATCCAACTGCAGCTAAGCCAGCCAGAGCAAGACACATATGAGACATCCGGCAGTGCCTCAAAATAA 660 0.4258 MGRGKIEIRRIDNSTSRQVTFSKRRKGLIKKAKELTILCDAQVGLVIFSSTGKLYEYSNTSMKSVIERYNTSKEEHQQLLNPNSEAKFWQREAEVLRHQLQTLQGNHRQMMGEQLSGLSVKNLQDLENQLEMSVRCIRMKKEQILTEEIQELNQKGNSIHQENLELYKKVYGTSEMAATSRDAFNPYGFHTSEDPQELIQLQLSQPEQDTYETSGSASK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01080 219 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr9g01080 219 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Accr9g01080 219 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Accr9g01080 219 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Accr9g01080 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr9g01080 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr9g01080 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr9g01080 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr9g01080 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Accr9g01080 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr9g01080 219 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr9g01080 219 Coils Coil 86 106 - -
Accr9g01080 219 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Accr9g01080 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr9g01080 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01080 Accr-Chr9 12932771 12942848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01080 1 218 MADS-box Gene Family AT4G37940 63.014 2.01e-91 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr9g01080 K-box 4.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01080 K09264 - gmx:100795778 330.102