Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01062 ATGTCTCCACCGCTGCTGGTAGCTGAGGAGGAAGGACAGAGCAATATTTCAACAGTAGCATCTTCACCGTCCTTGGACTCTATCTCCCATAATGGAACTGCTTTAAAAGAGCGCAATTACCTCGGATTGTCAGATTGTTCATCATCAGTTGACAGTTCTAATGTTCCAAACATGTCAGATGAGAAAAAGGACAACATGAATTTGAAGGCTACAGAGTTGAGGTTGGGTCTTCCTGGATCCCTGTCTCCTGAAAGGGATTCAGATCTTTATGCGTCAAACTCATCAAAGCTTGATGAGAAACCGCTATTTCCTTTGCTTCCTACAAAAGATGGAATCTGTTCATCATCCCAAAAAACTGTGGTTTCAGGAAACAAGAGAGGTTTCTCTGACACAATGGAGGGTTTCCCAGAGGGAAATTTTACTGGTAATTCAGGGATAAATGTAATGTTGCCTAGATCTTCCGGTCCTCAGCCAGCCTTTATGAAAGAAATGCCTGCTAAAGTTCCACAGGAACGGCCTTCTGCTGCTAATGGCCTTAGTCATAATCATACGGGTACTCCTGCTAATGGCAGTGCACCAGCTGCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATATAGGAAGAATTCATTGGCCAATACTTCAAAGAACAATGACGAAGTTGATGGAAAACCTGGTCCTGCTTCTCTCTTTGTGAAGGTTAGCATGGATGGCGCTCCTTATCTAAGGAAGGTAGATCTAAGGAATTATGCAACATATCAAGAACTGTCGTCTGCTCTCGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCTCACGGTGCTCCAGGCAGAGAAATGTTAAGTGAGAGCAAGCTGAGGGATCTGCTACATGGTTCTGAGTTTGTTCTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATCGACACATGCAAGAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTGGCTCCGAGAGCTATGGAAAAATCCAAGAGCAGGAGCTAG 1056 0.4413 MSPPLLVAEEEGQSNISTVASSPSLDSISHNGTALKERNYLGLSDCSSSVDSSNVPNMSDEKKDNMNLKATELRLGLPGSLSPERDSDLYASNSSKLDEKPLFPLLPTKDGICSSSQKTVVSGNKRGFSDTMEGFPEGNFTGNSGINVMLPRSSGPQPAFMKEMPAKVPQERPSAANGLSHNHTGTPANGSAPAAKAQVVGWPPIRSYRKNSLANTSKNNDEVDGKPGPASLFVKVSMDGAPYLRKVDLRNYATYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEFVLTYEDKDGDWMLVGDVPWGMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01062 351 MobiDBLite consensus disorder prediction 44 68 - -
Accr9g01062 351 MobiDBLite consensus disorder prediction 11 27 - -
Accr9g01062 351 MobiDBLite consensus disorder prediction 1 27 - -
Accr9g01062 351 MobiDBLite consensus disorder prediction 44 61 - -
Accr9g01062 351 MobiDBLite consensus disorder prediction 171 196 - -
Accr9g01062 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
Accr9g01062 351 Pfam AUX/IAA family 71 342 IPR033389 -
Accr9g01062 351 FunFam Auxin-responsive protein 226 343 - -
Accr9g01062 351 Gene3D - 228 345 - -
Accr9g01062 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 338 IPR003311 GO:0005634|GO:0006355
Accr9g01062 351 MobiDBLite consensus disorder prediction 175 191 - -
Accr9g01062 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01062 Accr-Chr9 12709698 12712959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01062 235 341 B3 DNA Binding Superfamily AT4G23980 29.907 2.35e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr9g01062 AUX_IAA 4.7e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01062 K14484 - gmx:100500373 541.191