Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01048 ATGGCCTCCGACGCCTTCGCGGATAAGAATGCTGTCTTCAGAAAACTCAAGGCAAAGTCAGATAACAAGATGTGTTTCGATTGCAATGCAAAGAATCCAACTTGGGCGTCGGTTACATATGGGATCTTCCTCTGTATCGATTGCTCGGCAGCTCATCGTAGCCTTGGTGTCCACGTCAGTTTTGTGAGATCTACAAATTTAGACTCATGGACTCCTGAGCAGCTGAGAACAATGAGCTTTGGAGGAAACAACCGTGCACATGTTTTCTTTAGGCAACATGGTTGGACTGATGGTGGAAAAATCGAGGCCAAGTATACATCTAGAGCTGCTGATTTGTATAGACAACTTCTCTCCAAGGAAGTAGCTAAAAGTATGGCAGAGGAGGCAGATTTAACACCCTCACCTGTTGCTGCTCAGTCTGCACAAGTGGCTAATGGACTTCCTGAAGTCAGGACCAATGAACCAGTGAAAGAGAACATTTCAGAAAAGCCAGAAATCCCTGAGGGCACTGCTTCCCCTAAAGCTTCTCATACAATAGTTTCCAGTACTGTCAAGAAACCTATTGGTGCCAAAAAAGGTGGCAAGACTGGGGGCCTTGGTGCCAGGAAGCTTACTAAAAAGCCAAGTGAATCTCTATATGAGCAGAAGCCAGAAGAAGCACCTGCTCCCGTTCCTTCCTCATCAAGCCATGCTTTGGCAGCTGGGCCACCCTTACCATCTCGGTTTGAGTATGTTGAAAACGTTCAGTCATCTGAGTTAAATTCAGGAGGTTCAAATGTAAATAGTCATGTGGCTCCACCAAAGTCATCGAGCTTTTTTGCTGATTTTGGGATGGATAGTGGCTTCCCAAAACGTTCTTCAAATTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGGAAGAAGTTCTCAAATGCTAAATCTATTTCCTCAGCCCAATTTTTTGGAGATCAGAACAGAGCTGCAGATGGGGACAGTCAAACTACTTTGGCTAAGTTCTCGGGTTCAACTGCTATCTCTAGTGCAGATCTTTTTGGTCACTCATCGGATCCCTCCCTTGATATCAGCGCAAGTGACCTCATCAATAGATTATCTTTCCAGGCTCATCAGGATATCTCTTCCATAAAAAACATTGCCGGAGAGACTGGGAAGAAGCTGAGTTCTTTGGCATCCACTTTGATAACAGATCTTCAGGACAGAATCCTCTAA 1212 0.4472 MASDAFADKNAVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHVSFVRSTNLDSWTPEQLRTMSFGGNNRAHVFFRQHGWTDGGKIEAKYTSRAADLYRQLLSKEVAKSMAEEADLTPSPVAAQSAQVANGLPEVRTNEPVKENISEKPEIPEGTASPKASHTIVSSTVKKPIGAKKGGKTGGLGARKLTKKPSESLYEQKPEEAPAPVPSSSSHALAAGPPLPSRFEYVENVQSSELNSGGSNVNSHVAPPKSSSFFADFGMDSGFPKRSSNSSKVQIQESDEARKKFSNAKSISSAQFFGDQNRAADGDSQTTLAKFSGSTAISSADLFGHSSDPSLDISASDLINRLSFQAHQDISSIKNIAGETGKKLSSLASTLITDLQDRIL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01048 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Accr9g01048 403 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Accr9g01048 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Accr9g01048 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Accr9g01048 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Accr9g01048 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 403 - -
Accr9g01048 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Accr9g01048 403 Pfam Putative GTPase activating protein for Arf 12 107 IPR001164 GO:0005096
Accr9g01048 403 Gene3D Arf GTPase activating protein 1 139 IPR038508 -
Accr9g01048 403 MobiDBLite consensus disorder prediction 129 244 - -
Accr9g01048 403 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Accr9g01048 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01048 Accr-Chr9 12460120 12464604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01048 13 90 C2H2 Transcription Factor Family AT4G21160 44.304 5.79e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01048 K12493 K11855 gmx:100789796 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01048 9 12460120 12464604 Accr9g01048 9 12460120 12464604 ECH