Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01039 ATGGCCGCTTTAGAATCTGGACTCACAGTCTTGGGATCTTTCCGCTGTTTTAGCAAGTACTCTTCACCTACAAAACCATTCGATTCGATAAAGCTCAACGTCTCCACTTCTCTGTTTGCCATTTCCCACAACCGCGTTGTCCCCTCAATTTTATCTTCCATCGACTCCGGCACAAGACTCTGCTTCGAATTATGCTCTGCGCTGCAAGAGGCGGCAACAGAAGAAAAACCAGATCAAACCCAGGAAACTACCCACATAAAAAAGAAGCTCTGCGTGTTTAATCTACCATGGTCATTATCGGCGGCGGACATCAAAAACCTCTTTGGTCAATGCGGAACTGTAACCGATGTCGAGATAATAAAAACCAAAGATGGGAAGAGCAGACAATTTACCTTCGTCACTATGGCTTCCGGGGAAGATGCTCAGGCTGCTATTGATAAATTTGACTCTCATGAATTGTCTGGCAGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCACGCCCTCCTCAAACTCCCCCTGCTGGTGAAACAAGCCATAAAATTTACGTGTCAAATCTTGCATGGAAAGCAAGGTCTAGCCATCTCAGAGCATTCTTCACAGAGAATTTCAAAACACCAGTTTCGGCCAGGGTCGTCTTCGACACCCCTAATGGAAGATCTGCTGGCTATGGATTTGTTTCTTTTGCTACAAGGGATGAAGCAGAGGCCGCCATTTCTACCCTGGATGGGAAGGAATTAATGGGACGACCACTTCGCCTAAAATTCAGTGAAAGGACTGTTAAAGAATCTGGAGATGAGAAAGGGGAAGAGCAAGGTTCTGATGATGAACCGGCTGAATCATAG 861 0.4576 MAALESGLTVLGSFRCFSKYSSPTKPFDSIKLNVSTSLFAISHNRVVPSILSSIDSGTRLCFELCSALQEAATEEKPDQTQETTHIKKKLCVFNLPWSLSAADIKNLFGQCGTVTDVEIIKTKDGKSRQFTFVTMASGEDAQAAIDKFDSHELSGRIIRVELAKRFKKPPPPRPPQTPPAGETSHKIYVSNLAWKARSSHLRAFFTENFKTPVSARVVFDTPNGRSAGYGFVSFATRDEAEAAISTLDGKELMGRPLRLKFSERTVKESGDEKGEEQGSDDEPAES 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01039 286 SUPERFAMILY RNA-binding domain, RBD 74 174 IPR035979 GO:0003676
Accr9g01039 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Accr9g01039 286 SUPERFAMILY RNA-binding domain, RBD 168 266 IPR035979 GO:0003676
Accr9g01039 286 CDD RRM_SF 90 161 - -
Accr9g01039 286 Gene3D - 65 169 IPR012677 -
Accr9g01039 286 Gene3D - 170 280 IPR012677 -
Accr9g01039 286 PANTHER OS02G0815200 PROTEIN 70 262 - -
Accr9g01039 286 MobiDBLite consensus disorder prediction 261 286 - -
Accr9g01039 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 258 IPR000504 GO:0003723
Accr9g01039 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 158 IPR000504 GO:0003723
Accr9g01039 286 SMART rrm1_1 186 260 IPR000504 GO:0003723
Accr9g01039 286 SMART rrm1_1 89 161 IPR000504 GO:0003723
Accr9g01039 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01039 Accr-Chr9 12292496 12295666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01039 89 272 Eukaryotic Initiation Factors Gene Family AT4G34110 26.500 1.17e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01039 - - qsa:O6P43_025150 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01039 9 12292496 12295666 Accr9g01039 9 12292496 12295666 ECH