Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01038 ATGGCTGCAGTTGGAAACCCAAAAACTTGGATCCCCTATGTGAATATCAGAGATTGCTCTCAAGGTTTTTGCAGTGTTTACTGTCCACAATGGTGTTACATAGTTCTTCCTCCTCCTCCTCCTCCTGCCCTAGATTTCCCTCAAGACGACAATTCATCCCAAAGTTTCTCTCCTCTCGTTATAGCCATAATTGGGATCTTGGCCAGTGCCTTTCTTCTGGTGAGTTACTACACTTTCATATCCAAGTACTGTGGTAACAGGGGAGGATCTTCAGACAGAGAGAATAGTCTTCATCACCAGAATGAAGAGATTGAAGATAATCACAACCCTTCTCTGCATGAGCCCTGGCATGTCCAAACCAATGGATTAGATGAAGCTCTGATAAAGTCCATTACAGTTTGTAAGTACAAAAGAGGAGATGGGTTGGTTGGTGTCACAGATTGCTCTGTTTGTCTCAGTGAGTTTCAAGAAGATGAACATGTCAGACTTTTGCCTAAGTGCAGTCACGCTTTTCACCTCCCCTGTATCGATCAATGGCTCAAATCTCACTCTAATTGCCCTCTCTGCCGTTCTCTGATCTTCACTTTCAGTAATTCCTCAACCCCTCAAGTGATGGTTCCACCTGTGATACAAGAATCAGAATCTTCTTCTTCTTCAAGGGAGATTCAGAATGCGAGTGAAGAAAATGGAGTTGGGGTTGGAAGAAGAAGCGGTGAAACAGTTGTGGTTGTAGAAGAAAGTCCGAAGCCGGCGTTGCGAGCTTTTAGTGATCTGGGTTTTCTGAGAGGGAGGCATCGAATGATTGAGATGATAAGAGATGAAGCGGATGAAGAAGATGAAGCCATAAGAAGATCAGTGTCCATGGATCATCATTCTCTACAAATTGGAGGAGTAGCAGTAGGATCAAACGAAGCAAGTACTTCAAAGAGATCATCACAAGGAGAGAGTAGCAAATCTAGTAGCAGAAGAAGAGTGACTCTGCATTGTGTTTTGAGTCCAATCACAATGAAGAGATCATTTTCCAGTGGAAGATTCTCGTTTCGCAGAAATGGCAGAGGAAGGCAGGGGATTATCCCTGCTTGA 1083 0.4377 MAAVGNPKTWIPYVNIRDCSQGFCSVYCPQWCYIVLPPPPPPALDFPQDDNSSQSFSPLVIAIIGILASAFLLVSYYTFISKYCGNRGGSSDRENSLHHQNEEIEDNHNPSLHEPWHVQTNGLDEALIKSITVCKYKRGDGLVGVTDCSVCLSEFQEDEHVRLLPKCSHAFHLPCIDQWLKSHSNCPLCRSLIFTFSNSSTPQVMVPPVIQESESSSSSREIQNASEENGVGVGRRSGETVVVVEESPKPALRAFSDLGFLRGRHRMIEMIRDEADEEDEAIRRSVSMDHHSLQIGGVAVGSNEASTSKRSSQGESSKSSSRRRVTLHCVLSPITMKRSFSSGRFSFRRNGRGRQGIIPA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01038 360 SUPERFAMILY RING/U-box 147 199 - -
Accr9g01038 360 MobiDBLite consensus disorder prediction 299 324 - -
Accr9g01038 360 Pfam Ring finger domain 147 190 IPR001841 -
Accr9g01038 360 SMART ring_2 148 189 IPR001841 -
Accr9g01038 360 CDD RING-H2_EL5-like 147 190 - -
Accr9g01038 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 194 IPR013083 -
Accr9g01038 360 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Accr9g01038 360 FunFam RING-H2 finger protein ATL54 123 196 - -
Accr9g01038 360 PANTHER RING-H2 FINGER PROTEIN ATL16 45 324 IPR044600 GO:0016567|GO:0016740
Accr9g01038 360 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g01038 Accr-Chr9 12288131 12289213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01038 6 359 C3H Transcription Factor Family AT5G17600 42.400 6.53e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01038 - - gmx:100792799 388.652