Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g01029 ATGGGGAAGAAGAAACCCAAGGAGCCTCAAGAAACCCCTAAAAGCAACGGTACTTCCGACATATTTAGCAAGCTATTTGGTAATGCATCGGAACAGGGCGTCAGCTCTTCTCTATTCTCAGATAGCAACCCCTTTCGGAAGAAGCCTTTTGAAACTGGTTCAAATTTCGGCGTAACCAATAATACTGAAAACGCTGGTAGCGTGGTCTCCGATAGCCCCAATTTTGAAGTGCTGAAGAAGGGGAAGAAACGCAAAGAGGAGAACTCGTCTGTTGATTCAGATGATACGTTTGAAGTTTCTGGGAAGAAGTTGAAATCCGGTTCCGATTTGGGTGCGCAGGTGACGACTACATTGCCGAAGGAAGAAAATCTTTTGTCTAAGGAAGGCGAGCAAAAAGGTGAGCTTGTGGATGATGGCAAGAAGAGAAATAAGAACAAGAGAAAAAGGGATGACATTGAGAAAGAGTGGGAATTAAAGAGGTATGGGGCAGTGGAGGAAGAGCAAGATGACGGGGAAGGCTTGGGGAAAAATGTTGTTGGGAACAAGAGGAAGACGGTGGATAATCCTGCCGACATGTTGGTAACGAATGAAGGTTTTGATGATGAGAAAAAGCTCTTGAGAACCATCTTTGTTGGGAATTTACCGCTCAAGGTGAAAAAGAAGACTTTATTGACGGAGTTTAAGAAATTCGGGGAGGTTGAATCCTTGAGGATTCGTTCTGTTCCAATATTAGATACCAAAAAACCTAGAAAGGGAGCTATCCTTTCGAAGAAAATCAATGATGCTGGTGATAGTGTTCATGCGTATATTGTTTTTAAGACAGAGCAGTCAGCTCAGGATTCTTTGTCCCATAACCTGGCTGTGGTTGGAGGAAATCACATTCGTGTTGACAGAGCATGCCCACCTCGCAAGAAACTTAAAGGAGAGCATACTCCATTGTATGATAACAAGAGAACTGTTTTTGTTGGCAACCTCCCATTTGATGTAAAGGATGAAGAACTATATAAACTGTTTTCTGGCATGTCCAACCTTGAATCCAGCATAGAAGCAGTTAGAGTCATTAGAGATCCTCATTTGAATATTGGGAAGGGTATCGCCTATGTGCTGTTTAAAACAAGGGAAGCTGCTAATTTTATTCTTAGGAAACGGAACTTGAAGCTTCGAGACCGAGAGCTGAGACTCTCTCATGCGAAAGCGGATGCCACTCCATCCAAAAGGCCAAACTCGTCAACACCACAAGCTTCTGGTACACCTGCGAAGAAGGTGGCCGTGGCTTCCTCAAGGTCTCCTTCAGGCAGTGCTTATATGACAAATAAAAAGTCCAATATGTCTTACCAAGGTCTGCGGGCAAACAAAACCGTCGCCCATAAGAAACCAGGAACCCCCAGAGTTGAGAAAACGACAGAGCGCAAGGCGAAAAGACCAGCAGTTGCCGCCAGAAGGGCTAAACTAAAAGCAGCATTGCCAAAGGAAGATGGTTCATCAAAACAAGCAGGAAGGAAACGCAAGCTTGATAGTAGAACTCCAGAAAGCTCCCTACGAAGTAAGAAAGTTAAGAAGAATTGGTAG 1569 0.441 MGKKKPKEPQETPKSNGTSDIFSKLFGNASEQGVSSSLFSDSNPFRKKPFETGSNFGVTNNTENAGSVVSDSPNFEVLKKGKKRKEENSSVDSDDTFEVSGKKLKSGSDLGAQVTTTLPKEENLLSKEGEQKGELVDDGKKRNKNKRKRDDIEKEWELKRYGAVEEEQDDGEGLGKNVVGNKRKTVDNPADMLVTNEGFDDEKKLLRTIFVGNLPLKVKKKTLLTEFKKFGEVESLRIRSVPILDTKKPRKGAILSKKINDAGDSVHAYIVFKTEQSAQDSLSHNLAVVGGNHIRVDRACPPRKKLKGEHTPLYDNKRTVFVGNLPFDVKDEELYKLFSGMSNLESSIEAVRVIRDPHLNIGKGIAYVLFKTREAANFILRKRNLKLRDRELRLSHAKADATPSKRPNSSTPQASGTPAKKVAVASSRSPSGSAYMTNKKSNMSYQGLRANKTVAHKKPGTPRVEKTTERKAKRPAVAARRAKLKAALPKEDGSSKQAGRKRKLDSRTPESSLRSKKVKKNW 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g01029 522 MobiDBLite consensus disorder prediction 123 150 - -
Accr9g01029 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 392 IPR000504 GO:0003723
Accr9g01029 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 251 IPR000504 GO:0003723
Accr9g01029 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 399 IPR000504 GO:0003723
Accr9g01029 522 MobiDBLite consensus disorder prediction 1 150 - -
Accr9g01029 522 MobiDBLite consensus disorder prediction 402 449 - -
Accr9g01029 522 Gene3D - 202 306 IPR012677 -
Accr9g01029 522 CDD RRM1_RBM34 207 297 - -
Accr9g01029 522 SUPERFAMILY RNA-binding domain, RBD 314 413 IPR035979 GO:0003676
Accr9g01029 522 CDD RRM2_RBM34 319 395 IPR034221 -
Accr9g01029 522 MobiDBLite consensus disorder prediction 12 71 - -
Accr9g01029 522 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 298 507 - -
Accr9g01029 522 SMART rrm1_1 319 395 IPR000504 GO:0003723
Accr9g01029 522 SMART rrm1_1 208 297 IPR000504 GO:0003723
Accr9g01029 522 MobiDBLite consensus disorder prediction 458 475 - -
Accr9g01029 522 MobiDBLite consensus disorder prediction 484 522 - -
Accr9g01029 522 Gene3D - 311 407 IPR012677 -
Accr9g01029 522 MobiDBLite consensus disorder prediction 76 102 - -
Accr9g01029 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 301 IPR000504 GO:0003723
Accr9g01029 522 MobiDBLite consensus disorder prediction 396 522 - -
Accr9g01029 522 SUPERFAMILY RNA-binding domain, RBD 202 307 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g01029 209 398 Eukaryotic Initiation Factors Gene Family AT1G22760 26.263 7.17e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g01029 K14837 - qsa:O6P43_033336 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01029 9 12162036 12166428 Accr9g01029 9 12162036 12166428 ECH