Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00965 ATGGCCATCCCTCAAACTCAAGATCCACCCACATCTGTAAATCTGTATCCACAAGAACTTCAGTTAAAACTATACCAGGCCTTCATTTTCTCAATTCCAATCCTATTTTCCATCATTCTCTTCCTCTTGTTTTATTTGTTCTACCTCAAGCGCAGGGCTTCCTCTCTCTCTTCCCCTCCTCACTTTCTTCCCACCACTGCTCCTTCAACTGCCTATCATTCCACTGGATTTCAATTGACGCTTCGGTTCCTTGACACTCTTCCAAAAATTTTGTTTGATGAAGAATTGAAAGCAAGAGATTCACAATGTTGTGTATGTCTGGGAGAATTTGAGATAAAAGAAGAGGTATTACAGATCCCTCAGTGCAAGCATGTATTCCACAGAGATTGCATTTACCATTGGCTCTATTCACACTCTACTTGTCCACTGTGTAGATGTTGTATCATCCCTCCCACCAAGTTTCTGAATCCACCAACCCTCCATCCTCCTCCTCCTCTTGCAGATGAAGCTGCTTCTGCTTCTGTTTCTGCTTCTTCCATCTAA 543 0.4254 MAIPQTQDPPTSVNLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPPHFLPTTAPSTAYHSTGFQLTLRFLDTLPKILFDEELKARDSQCCVCLGEFEIKEEVLQIPQCKHVFHRDCIYHWLYSHSTCPLCRCCIIPPTKFLNPPTLHPPPPLADEAASASVSASSI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00965 180 CDD RING-H2_EL5-like 102 145 - -
Accr9g00965 180 Pfam Ring finger domain 102 145 IPR001841 -
Accr9g00965 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 155 - -
Accr9g00965 180 SUPERFAMILY RING/U-box 81 158 - -
Accr9g00965 180 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Accr9g00965 180 SMART ring_2 103 144 IPR001841 -
Accr9g00965 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 150 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00965 Accr-Chr9 11287034 11288493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00965 3 150 C3H Transcription Factor Family AT4G10150 40.789 9.58e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00965 K19039 - gmx:100794298 205.682