Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00963 ATGTTGAATCGTGGAGGGTCTTTTTCGATGTCTTCAGCTGAAGGTGGTGGTGGGGATGATCTGTATGAAGAACTATGGAAGGCCTGTGCAGGACCTCTTGTCGACGTTCCTCGGGCCAACGAGAGGGTTTACTATTTTCCTCAAGGACACATGGAGCAATTGGAGGCATCAACAAATCAAGAACTTAATCATAGGATTCCGGTTTTCAACCTTGCCTCAAAGATCCTTTGTCGCGTGGTGAACGTCCATCTGCTGGCTGAGCCAGAAACTGACGAGGTTTACGCACAAATTACTCTGGTGCCTGAATTCGATCAAAATGAGCCTACCAGCCCAGATCCATGCTCCGCCGAACTTCCAAGGCCAGCAGTTCATTCATTCTGCAAAGTTTTGACGGCATCTGATACAAGCACCCATGGTGGGTTCTCCGTTCTTAGAAAACACGCCACTGAATGCCTTCCTCCTCTGGACATGTCCCAACCAACCCCCACTCAGGAATTGGTTGTCAAAGATCTTCACGGTTATGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCTCGTAGGCACTTGCTCACAACTGGATGGAGTACTTTTGTTACTTCAAAGAGATTAGTTGCTGGAGATACCTTCGTGTTTTTAAGAGGGGTCAATGGAGAATTACGTGTTGGAGTGAGGCGTCATGCTCGTCAGCAGAGTAGCATGCCATCGTCCGTAATTTCCAGTCAGAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCAACCCAAACTCTTTTTGTTGTATACTATAAACCAAGGACAAGTCAATTTATCATAAGCGTGAACAAGTATTTAGAGTCTATCAACAATAAGTTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAACTGACAAGAGATTTTCGGGCACTATCATTGGAGTGGATGATATTTCTCCTCACTGGGTAAATTCAAGCTGGCGATCACTCAAGGTTCAGTGGGATGAACCTGCCGCTGTTCCAAGGCCAGATAAGGTTTCACCATGGGAAGTGGAACCTTCTCTGGCTCCCATCACTCCATCTTCGGTTCAACCTCCTGTTGTAAAGACCAAGAGACCTCGACCACCAAGTGAAATTCCAGATCTTGACACAACTTCCACTGCCTCTGCTTTCTGGAATTCTGAGCTGATGCAACCTGATATTACCCAACTAGGAGTTATGGCTGAAAGCAATAGGACTGACAATTCCGGTTTGTGGCATCACAGTCAAGCTGAAATGAATAGTAAAAGCAGCAGCAATAGTCTTTCAAGAAATCAAACAGAAGGGAGTTGGCTATCTTCTCCCCATTCAAGTAGTCCTCCTCAACTGTTGCAGGACACAACAGATGATGGCAAAAGCGTCGCTGCTTGGCCTGTTCACTCAGTTCATCCGACACCTCACTCATCGCGACTGAACAATGATCATGTGCTTGAACAAGGTGGCAAGGAGAATAAAGTTGAGATTACTACAAGCTGTCGGTTGTTTGGGATTGAGCTTATTGGTCATTCCCAAAATTCAACTGCTATGGGGAAGGCACCTGCACCTACAGCTGGTATAGTTAATGGCCCTTCAGAAAATCATGTCAATGCTTTGTCTGGAACTGATACAGACCGTGAGTATAACATCTCAAAGGCTTCCTATGAGGGGAAACAAGAACGGCTGCAAGTAAAGGAGACTCAGAGCAAGCAGATATGTTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTCGCAGTGGGACGTGCTGTGGACTTGGCCATGTTGGATGGTTATGATTATCTTATAGATGAGTTGGAGGAGATGTTTGACATAAAAGGACAACTTAAAGATAGGAAGAAATGGGAAATTGTCTTCACTGACGATGAAGGGGATATGATGCTTGTGGGTGATGATCCATGGCCTGAATTCTGTAGTATGGTCAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTACGGGAAGCAAACTGCCTATTTCTTCAATGGAAGTTGTTTGTGGGAAGGAAGTTGGTTTATTTAGACATAGGAAGTTTGTAATTTGGACATGA 2103 0.4551 MLNRGGSFSMSSAEGGGGDDLYEELWKACAGPLVDVPRANERVYYFPQGHMEQLEASTNQELNHRIPVFNLASKILCRVVNVHLLAEPETDEVYAQITLVPEFDQNEPTSPDPCSAELPRPAVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVVKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGVNGELRVGVRRHARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLESINNKFTVGMRFKMRFEGDESPETDKRFSGTIIGVDDISPHWVNSSWRSLKVQWDEPAAVPRPDKVSPWEVEPSLAPITPSSVQPPVVKTKRPRPPSEIPDLDTTSTASAFWNSELMQPDITQLGVMAESNRTDNSGLWHHSQAEMNSKSSSNSLSRNQTEGSWLSSPHSSSPPQLLQDTTDDGKSVAAWPVHSVHPTPHSSRLNNDHVLEQGGKENKVEITTSCRLFGIELIGHSQNSTAMGKAPAPTAGIVNGPSENHVNALSGTDTDREYNISKASYEGKQERLQVKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLDGYDYLIDELEEMFDIKGQLKDRKKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMSTGSKLPISSMEVVCGKEVGLFRHRKFVIWT 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00963 700 MobiDBLite consensus disorder prediction 425 467 - -
Accr9g00963 700 Pfam AUX/IAA family 565 618 IPR033389 -
Accr9g00963 700 Pfam AUX/IAA family 625 666 IPR033389 -
Accr9g00963 700 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Accr9g00963 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Accr9g00963 700 MobiDBLite consensus disorder prediction 425 464 - -
Accr9g00963 700 Gene3D - 287 359 - -
Accr9g00963 700 Gene3D - 578 670 - -
Accr9g00963 700 Pfam Auxin response factor 252 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Accr9g00963 700 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Accr9g00963 700 Gene3D - 123 228 IPR015300 -
Accr9g00963 700 FunFam Auxin response factor 577 670 - -
Accr9g00963 700 CDD B3_DNA 124 226 IPR003340 GO:0003677
Accr9g00963 700 SMART B3_2 126 228 IPR003340 GO:0003677
Accr9g00963 700 FunFam Auxin response factor 124 228 - -
Accr9g00963 700 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Accr9g00963 700 SUPERFAMILY CAD & PB1 domains 583 658 - -
Accr9g00963 700 SUPERFAMILY DNA-binding pseudobarrel domain 117 255 IPR015300 -
Accr9g00963 700 MobiDBLite consensus disorder prediction 341 386 - -
Accr9g00963 700 FunFam Auxin response factor 287 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00963 Accr-Chr9 11277433 11281162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00963 17 682 B3 DNA Binding Superfamily AT4G23980 58.902 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Accr9g00963 AUX_IAA 1.4e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00963 K14486 - gmx:100779003 996.497