Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00953 ATGGAAGCGGATTTCGTCACCAATGGCATGTTCATAGAAGAACCCTCGGAGGCTGATGAAAATGAGAACAATGAGAATTTATTAATTGAAGGTGAAAAGTGTGGAATTTGCATGGATATTGTCATTGACAGGGGAGTTCTGGATTGCTGCCAGCACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTTCCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACGTGTGTTCCAGTATATGATACCATTGGAAGCAATAAAATTGAAGATGACATGTTATCCAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGCGGATCAGCAACAACTGAAGGTGATTTGAGCCTTGATACATCGATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTCTGCGTGGGATTTGATCCTGAAGGCACATCTGAAGTTACATGGTTATGCCCAAGGTGTGTGCCGGATAAAGTTACGGACAACATGGCTGCAAGTTCATTAGAGAAGACAACTATGGAAATTAACCCAGAAAACGGTGACAAGGAAGATCAAGCTGATGAATCTTTTTCAGGCAAAGTTTCTGTATCTGTTGCTGATGCTGGGGAGACAGCTGTTGTTGTCTCTTTAGTTGAAGGAAACCAATGGATTCCAGTATCAAGAGAGAAGGGCTTGTCACCCCTTGAAGCTAGCAAGAATCCAATGACTGAATCATGTGTTTCCATACCTGACCCAAATAATCACCAAAGTACTACGGAGGAGACTATTAATTCACCAGGGAAGCAGCAGGAGCTGGAGCTGTCCTTATCGCATGGTGTGACCCGTAGCTTGTCCTCTAACACCATAGGGCCTGATGATTTGAATAAAGGAACTGATGGAGAAAGGAGTGATCCAATTAGCTTAAGCGGAACCAATATATTAAATGAATCTCATGACAGAGCTAGTATATCTAGAAATGGATCTGACATGGGTCTTCATCTCGGTTTGTCAGTTGGCTCCTTTTTATGTGTTGATGACACTGACATGAACGCAACAAGAGATGAAGAAACTAATCTGCAGCTGACAAATTCCGAAGAATTTAAATTGAATGGAGATGAAGTGGAACCAAATGCTCTTAAGGACAATGCCAGAGTAATGGGGCAAAAGAGAAAGCATGCTGATCACAGTAATGATGAGGTTCATATAGAAGTCGATAGAGATGCCGAACTCAAACCTGAAGTTGAAGTATCACAAAAGAAACTTAGAACTGATGGTAGTCGACTGAATAAACATGAGAGTGTAGCATGTGCTCCTCTTTTAGATAATACTAAAGCAAGCCCTTCTACTACTCCTATTTCCAGACACGATGGTGCAAGACATTGCACAACACAGGAGAATGCCGCATCAGATATAATGAGTATAGTGAAAGGCACGAAGTGGAAGCCTCCAAAGGGAATTTCTGGCTCAAAATCTAGTAACGAGTTATCTAAAAGCAATAAAAACATGGCGGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTCCAGATCATGGGGAGTCATCCTTAGTTCAAAACCTGAGGGAAGACATTAGAGAAGCTGTCCGCAACAAATCCTATAAAATTTTTGAAGAAAATCTTTTTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTGTAGCAGGGCCTAAAAATGAACCTCCAAATAAGCTGCCCCCTATGGCTTTGAAGTCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTTCGTGAACATTTAACCAGGAAAATTTTTGCGACCTCAAATGGAAGAAGAAAGCGTGCGTGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCAATGAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTGGATCTTCTAAGAAAGAATTCAGAGAGTGCAGAATCGAAAGAGGGTCCTGAAGGTCAGGCCAAAAATTCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGAAAAGATGATGTCAAGCCAATTTCTGTTCTTGAAACTGATGCTCACTCAGATCAGAATAAAAAACCTAACCTTTCAGGAAAAGCATCAAATCAGTCTCTTGATAATAGTCCTATTAAAGCAAAAGACGTCAATAATATTTTACCAAAGGGCAGAGATTGCTCATCTGAAAATATAGTAAATAAGAAGATTGTACATAGCTCTGTTGATGGCAATTCGACTTCTGGTAAAGTACCTTCAAGCAGACACTCAAAAGGGGCAACATGTTCTTCCCCTGGTGGCTCCAGAGTTGACTCAAAGGAGTCAAGCGGTACATCAGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAACAGCTGCTACTTGCAAGAAAATGACAAATGACAGTCAGGGAGATAATGCAATTCTTGGAGGAAATTATCCTTTATTGGCCCAATTGCCAGCTGATATGAGACCAGTATTGGCACCCAGTCGCCACAATAAAATTCCTATACCAGTTAGGCAGACACAACTTTACCGCCTGACCGAACACTTCTTGAGGAATGCAAATCTGTTGGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTAGTGTATCTGAATCTCTGTTCGCAGGAGCTCTTGCACCGCTCAAATAATAGAAAATCCAATGGAGCAACAGATATAACTCCGCAGGTCTCATCAGCAGTCCCTATTGATAGATCAGAACAAAATACTGATGATGATCTTTCAACTGACCCTGCAGTTCAAATGGCCCTTAAAAATGCTGGTCTTTTGTCCGATTCTCCTCCTTGTAGTCCAAGTGAGAAAGGAGAAATACCGGATAAAGAAGCTGATCTTTCAGGGCCTGATAATATTCTCGAACTGGATTTTCAACCAGAGATAGATATTTATGGGGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCAGGTGATGGTAGAGGCTTATATTCACAAGAAGAAGAAAGCGAGTCAAAAATGAAACTCATTTTCTCTACCATGAACTTGAAGAATTCAGATACTGTTTTGGATTGTATGGATTCTGAGAGATTGGAAAACAATGTTGTTCTAGGAGATCCCTCCTGCTCATCAAATCATAATGATGCAGCCAACGCGGACCCTGCTATTAATGCAGAGCCTGGCAATTCTCCTTCTGCTCCTTCCGAGGTCCTTCCCAGTGAGCCCTGTGATGCAGAATGCGAAGAATTATATGGTCCAGAGAAAGAACCACTTGTAAAAAAATTTCCCAATGAGGAATTTATAACATCGCACGGAGAGGACAAATCAGGAACTTCAACTGAAGGCAATGGTTGTCATAATAAAGAAAAAGCATCAGACCAAGCAGTAAACGCATCTGAATCTGGAAATGACAAACTTGCAAAGAATATACCGGTCACTGTGATTGCTGACAATTCATCTAATGCATCTGATGTTAGTGAAAATTTACAGAGGAGGGGAGAGAAATCTGATACCGCTCTTGAGCAGTCTGATTCTACAGATAATGTAGTTAGAAAGGTTGAAGCCTATGTCAAGGAGCATATCAGGCCACTGTGCAAGAGTGGCGTGATCACAGCTGAACAGTATAGGTGGGCTGTCGCAAAAACGACGGAAAAGGTTATGAAATACCATTGCAAGGCCAAGAATGCCAATTTCCTCATAAAGGAAGGCGAGAAGGTGAAGAAACTCGCAGAGCAGTATGTTGAAACAGCTCAACACAATAGGAAAAATTGA 3900 0.4108 MEADFVTNGMFIEEPSEADENENNENLLIEGEKCGICMDIVIDRGVLDCCQHWFCFACIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKIEDDMLSRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSATTEGDLSLDTSIACDSCDIWYHAFCVGFDPEGTSEVTWLCPRCVPDKVTDNMAASSLEKTTMEINPENGDKEDQADESFSGKVSVSVADAGETAVVVSLVEGNQWIPVSREKGLSPLEASKNPMTESCVSIPDPNNHQSTTEETINSPGKQQELELSLSHGVTRSLSSNTIGPDDLNKGTDGERSDPISLSGTNILNESHDRASISRNGSDMGLHLGLSVGSFLCVDDTDMNATRDEETNLQLTNSEEFKLNGDEVEPNALKDNARVMGQKRKHADHSNDEVHIEVDRDAELKPEVEVSQKKLRTDGSRLNKHESVACAPLLDNTKASPSTTPISRHDGARHCTTQENAASDIMSIVKGTKWKPPKGISGSKSSNELSKSNKNMAGLRVKKIMKRAPDHGESSLVQNLREDIREAVRNKSYKIFEENLFDTKLLAAFRAAVAGPKNEPPNKLPPMALKSKKSMLQKGKVREHLTRKIFATSNGRRKRAWDRDCEIEFWKYRCMRAMKPEKIETLKSVLDLLRKNSESAESKEGPEGQAKNSILSRLYLADTSVFPRKDDVKPISVLETDAHSDQNKKPNLSGKASNQSLDNSPIKAKDVNNILPKGRDCSSENIVNKKIVHSSVDGNSTSGKVPSSRHSKGATCSSPGGSRVDSKESSGTSDCIKSDKRKWALEVLARKTAATCKKMTNDSQGDNAILGGNYPLLAQLPADMRPVLAPSRHNKIPIPVRQTQLYRLTEHFLRNANLLVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRSNNRKSNGATDITPQVSSAVPIDRSEQNTDDDLSTDPAVQMALKNAGLLSDSPPCSPSEKGEIPDKEADLSGPDNILELDFQPEIDIYGDFEYDLEDEDYIGAGDGRGLYSQEEESESKMKLIFSTMNLKNSDTVLDCMDSERLENNVVLGDPSCSSNHNDAANADPAINAEPGNSPSAPSEVLPSEPCDAECEELYGPEKEPLVKKFPNEEFITSHGEDKSGTSTEGNGCHNKEKASDQAVNASESGNDKLAKNIPVTVIADNSSNASDVSENLQRRGEKSDTALEQSDSTDNVVRKVEAYVKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYVETAQHNRKN 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00953 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 204 IPR013083 -
Accr9g00953 1299 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 760 803 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 1145 1180 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 760 797 - -
Accr9g00953 1299 SMART ring_2 124 183 IPR001841 -
Accr9g00953 1299 SMART ring_2 34 72 IPR001841 -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 717 735 - -
Accr9g00953 1299 Pfam Ring finger domain 33 73 IPR001841 -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 708 747 - -
Accr9g00953 1299 Coils Coil 651 671 - -
Accr9g00953 1299 PANTHER RING FINGER PROTEIN 41, 151 115 1290 - -
Accr9g00953 1299 SUPERFAMILY FYVE/PHD zinc finger 148 186 IPR011011 -
Accr9g00953 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 111 IPR013083 -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 1080 1122 - -
Accr9g00953 1299 SMART PHD_3 132 184 IPR001965 -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 1204 1220 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 255 334 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 260 315 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 1080 1094 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 933 954 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 933 964 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 1149 1180 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 198 223 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 204 218 - -
Accr9g00953 1299 Pfam PHD-finger 149 185 IPR019787 -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 977 999 - -
Accr9g00953 1299 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 501 520 - -
Accr9g00953 1299 MobiDBLite consensus disorder prediction 1194 1220 - -
Accr9g00953 1299 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
Accr9g00953 1299 SUPERFAMILY RING/U-box 24 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00953 Accr-Chr9 11132421 11141925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00953 29 76 C3H Transcription Factor Family AT2G39100 37.255 1.49e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr9g00953 PHD 7.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00953 - - gmx:100808102 1520.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00953 9 11132421 11141925 Accr9g00953 9 11132421 11141925 ECH