Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00939 ATGACCACCTTAATACCCTTATTCCTACTATTATTAACAATCCAGTGTGCAAGTGGGTCTCAAGAACTAGATGCTGCATGCCCAACCACGTATTGTGGACGAATCGAAATCAAGTTCCCTTTCGGCTTAAAAGGAACCAACCAGAGTGGCCGCCGATGTAGCTACCCTGATTTCAGTGTTTCCTGCAACAATCAGAGCCAAATCATCCTCTCGCTTCCAGATTCTTCCGGCGACTTGCTCATCAAGGGCATCGATTACGCCTCACAAACCCTTTTGGTCAATGATCCTAGTCAATGCCTACCCAGACGATTCTTTCTGGATCGTCTCAAACTTTCTTCTTCTCCCTTCATTTTGGACCCTGCTCTGTACCATCTCATCAGCCTCACTTTCCTTCGTTGCCCTTATAATCTCACCCAAAATGACCAATTCACTTCAGTTCATTGTCTGAGCGATCTCGCTAATTCATCTTTTGCTGTTATATACCTTTGGGCGCGATTTATTCCTCCGCTCTTGAATGAATCGTGTGAGGTTATTAATTCCTCTGTTCCTTACCCGATTTCTAACCTTGACACGTGGCCGGTCGATATCGGCAATGATTTGCAGTTGACTTGGGACAGGCCACAGTGTGGCCGCTGTGAAGACCTGGGACAAGATTGTGGGTTCGCCGGCGATTTGGGTCACCGAACAGCATGTTTCTCTCGTCCCCATGAAAGCTCAGGTCTTTCGAGGGGTATAAAATATGGGCTAACACTTGGAGTGGGAGTCCCTGGGCTCTTGTGTTTAATTGGGCTCAGTTGTTTCATTTGTGGCCGAATACGACGTCGTCGAAATATCAGGCCCAGCATAGATCTTCCCATCACATCATATGTGGTCCAGTCGGGCCCATTCAGAATGGGCCTAGACGGGTCAACAATAGAGAAGTATCCAATGACTCTTCTTGGCGAGAGTAAGAGGCTACCCAAGCCCAACGACAACACTTGCTCAATATGCTTGTCGGAGTATGAGCCCAAAGAGACATTGAGAACCATACCCGATTGCAACCATTATTTTCATGCACACTGTATAGATGAATGGCTCAGGATGAATGCCACGTGTCCCGTTTGCCGGAATTCACCTACACTCACACCCTCTTCTACTTCTTCTTCATCATCTCTGTCTCCTCCTTCCTCCGTGTTCTCTTCACATTAG 1188 0.4722 MTTLIPLFLLLLTIQCASGSQELDAACPTTYCGRIEIKFPFGLKGTNQSGRRCSYPDFSVSCNNQSQIILSLPDSSGDLLIKGIDYASQTLLVNDPSQCLPRRFFLDRLKLSSSPFILDPALYHLISLTFLRCPYNLTQNDQFTSVHCLSDLANSSFAVIYLWARFIPPLLNESCEVINSSVPYPISNLDTWPVDIGNDLQLTWDRPQCGRCEDLGQDCGFAGDLGHRTACFSRPHESSGLSRGIKYGLTLGVGVPGLLCLIGLSCFICGRIRRRRNIRPSIDLPITSYVVQSGPFRMGLDGSTIEKYPMTLLGESKRLPKPNDNTCSICLSEYEPKETLRTIPDCNHYFHAHCIDEWLRMNATCPVCRNSPTLTPSSTSSSSSLSPPSSVFSSH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00939 395 SUPERFAMILY RING/U-box 321 374 - -
Accr9g00939 395 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 372 IPR046948 -
Accr9g00939 395 CDD RING-H2_EL5-like 327 369 - -
Accr9g00939 395 ProSiteProfiles Zinc finger RING-type profile. 327 369 IPR001841 -
Accr9g00939 395 Pfam Ring finger domain 325 369 IPR001841 -
Accr9g00939 395 Pfam Wall-associated receptor kinase galacturonan-binding 27 95 IPR025287 GO:0030247
Accr9g00939 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 373 IPR013083 -
Accr9g00939 395 SMART ring_2 327 368 IPR001841 -
Accr9g00939 395 MobiDBLite consensus disorder prediction 373 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00939 Accr-Chr9 10979505 10982882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00939 27 373 C3H Transcription Factor Family AT2G46495 35.112 5.76e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00939 - - gmx:100810240 334.339