Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00909 ATGGCTGAGATAAGTGCCGATGTGTCCTTCGATCAAGTTCCAGCGAGGAAGCAGCGAAGCCGAAGAGCGTTGAAGGATAAAAATCCCTCAACCAACGATGTCAAATCCTTGCCCAAGAAGCTGCCCGATTCACCACCGGTTACTATGGAAGCAAACGCCGCAAAGGAGAACCAATCGAGCGTCCCTGAATCTCAACCCCGATCTTCACCCAAGAAGGGAAAAGCTGCCTCCAAGAAACAGTCGAAGCAATCTTTTGATAAAGATTTGCAAGAAATGCAGCAGATGCTGCAAAAATTGCGCCTCGAGAAGGAGAAAACTGAAGAGCTCTTGAAGGTCAAAGATGAGATGTTGAAGCAGAAGGAAGAGGAGCTCGACGAGCGTGGCCGCAAGCAGGAGAAGCTTCAGATGGAGTTGAAAAAAGTGCTGAAGATCAAGGAATTCAAACCCAACATGAATTTGCCTATGCTGAAAGAAAAGGAGCAAGAAAAGGACAAGAAGAAGAAGAATGGATGTGCCGTGAAAAGGCCTTCTCCACCTTACATTTTGTGGAGCAAAGATCAATGGGCTGAGGTTAAGAAAGCGAATCCAGAGGCAGATTTCAAGGAAATTTCAAACATGTTAGGGGCTAAATGGAAGACTATCAGTGAACAAGAGAAACAGCCTTATGAGGAGAAATATCTTGTCGAGAAGGAAGCGTATCTGCGGGTAATCACAAAGGAGAGACGTGAAATTGAGGCGATGAAGCTCTTGGAAGAGGAGCAAAAGCAGAAGACTGCCATGGAATTGCTCGAACAGTATATGCTGTTCAAACAAGAAACAGGGAAAGAAAGCAAGAAGAGCAGAAAAGAGAAGGATCCACTGAAACCAAAGCATCCTGTGTCAGCTTTTCTATTGTACACGAATGATAGGAGGGCAGCTATTCTTGCGGAGAACAAGACTATCTTGGAGGTTTCAAAGATTGCTGGTGAGGAGTGGAAAAACTTGACAGAAGATCAGAAGAGACCTTATGAAGAGATGGCGAAGAAGAACAAGGAGAAATATCTTCAAGATATGGAGGCTTACAAACAGAAGAAGGATGAGGAGGCTGCGAATCTCAGGAAGGAAGACGAGGAGTTAATGAAGCTTCAGAAAGAAGAAGCCTTGAAACTGCTGAAGAAGAAGGAGAAAACAGAGAATCTTATCAAGAAGTCAAAGAAGAAGAAACAGAGTAAGGAAGATAAGAATTCTGATCCAAACAGGCCAAAGAGACCAGCATCCTCATATCTGCTATTCAGCAAGGAAGCAAGGAAGAGCATACAGGAGGAACGACCAGAGATCAATAACTCAACACTGAACTCACTCATATCAGTGAAATGGAAGGAACTGAGAGAGGAAGAGAGAAAATTGTGGAACGACAAAGCTGCGGAGGCAATGGAGGCATACAAGAAGGAATTGGAGGTGTATAATAAATCGATGGCTGCTGAGTTGGACCAGAAAACCCAAGATTGA 1488 0.4422 MAEISADVSFDQVPARKQRSRRALKDKNPSTNDVKSLPKKLPDSPPVTMEANAAKENQSSVPESQPRSSPKKGKAASKKQSKQSFDKDLQEMQQMLQKLRLEKEKTEELLKVKDEMLKQKEEELDERGRKQEKLQMELKKVLKIKEFKPNMNLPMLKEKEQEKDKKKKNGCAVKRPSPPYILWSKDQWAEVKKANPEADFKEISNMLGAKWKTISEQEKQPYEEKYLVEKEAYLRVITKERREIEAMKLLEEEQKQKTAMELLEQYMLFKQETGKESKKSRKEKDPLKPKHPVSAFLLYTNDRRAAILAENKTILEVSKIAGEEWKNLTEDQKRPYEEMAKKNKEKYLQDMEAYKQKKDEEAANLRKEDEELMKLQKEEALKLLKKKEKTENLIKKSKKKKQSKEDKNSDPNRPKRPASSYLLFSKEARKSIQEERPEINNSTLNSLISVKWKELREEERKLWNDKAAEAMEAYKKELEVYNKSMAAELDQKTQD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00909 495 Coils Coil 82 137 - -
Accr9g00909 495 MobiDBLite consensus disorder prediction 390 440 - -
Accr9g00909 495 SUPERFAMILY HMG-box 409 485 IPR036910 -
Accr9g00909 495 MobiDBLite consensus disorder prediction 51 71 - -
Accr9g00909 495 MobiDBLite consensus disorder prediction 14 33 - -
Accr9g00909 495 MobiDBLite consensus disorder prediction 272 290 - -
Accr9g00909 495 CDD HMG-box_AtHMGB6-like_rpt1 174 241 - -
Accr9g00909 495 SMART hmgende2 172 242 IPR009071 -
Accr9g00909 495 SMART hmgende2 413 483 IPR009071 -
Accr9g00909 495 SMART hmgende2 288 356 IPR009071 -
Accr9g00909 495 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 491 IPR044601 GO:0003677
Accr9g00909 495 MobiDBLite consensus disorder prediction 152 171 - -
Accr9g00909 495 MobiDBLite consensus disorder prediction 1 100 - -
Accr9g00909 495 Coils Coil 464 491 - -
Accr9g00909 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 289 355 IPR009071 -
Accr9g00909 495 MobiDBLite consensus disorder prediction 152 178 - -
Accr9g00909 495 Coils Coil 337 407 - -
Accr9g00909 495 MobiDBLite consensus disorder prediction 272 291 - -
Accr9g00909 495 Pfam HMG (high mobility group) box 289 355 IPR009071 -
Accr9g00909 495 Pfam HMG (high mobility group) box 173 235 IPR009071 -
Accr9g00909 495 Pfam HMG (high mobility group) box 414 481 IPR009071 -
Accr9g00909 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 414 482 IPR009071 -
Accr9g00909 495 SUPERFAMILY HMG-box 160 236 IPR036910 -
Accr9g00909 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 173 241 IPR009071 -
Accr9g00909 495 Coils Coil 237 257 - -
Accr9g00909 495 Gene3D High mobility group box domain 271 368 IPR036910 -
Accr9g00909 495 Gene3D High mobility group box domain 393 494 IPR036910 -
Accr9g00909 495 Gene3D High mobility group box domain 157 261 IPR036910 -
Accr9g00909 495 SUPERFAMILY HMG-box 276 360 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Accr9g00909 HMG_box 7.6e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00909 K09273 - cave:132175196 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00909 9 10690927 10692984 Accr9g00909 9 10690927 10692984 ECH