LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr9g00783	ATGTCCTCGTCGATCGTAGCAGAACGATCCAGGGCATTGTCAAAAATTCTCTGCAACTTCATCTTGGTCCGAAACATGGGCGGGGGTCCTCGGACTTTCCCGGGCGGCGTCAACAAGTGGAAATGGAAGCGCATGCACGAGAAGCGAGCCAGAGATAAAGAGAGAAGGCTTCTTGAACAAGAAAAGCAGCTCTACCAGGCTCGCATTCGCTCCCATATCCGAGTTAAACTCGCGGGAAAACCTGACACCTCTAGCGCCACTCACAGCCCGATGGCCCCGGAGGACCATATTAAGGCCTTAGCCAACCGATTTATGAAGGAAGGTGCTGAAGATCTCTGGAACAGAAATGACGGTCCGTTGAAGCCCCCGCCCCCGCGTCTCAGAGAATTTCCGGGATCAAGCAGACGGCGGGGATCAATATCATCGCCTGTTGATCCGAGGAAACTGGTACCGGAAGGCCGTCACATGTTGTCTGATCGCCAAAATAAAAATTTGATGAATACGAGTAGAAATTCTACTCATACCAGGGATTACTCAACGCAAAGTCGGAGGAGGTTTCAAAGGAATGAGAGCTCGTCAGAGGATGAGGATTCTGATTCTGGTTTGGAGAGAAATCCTACAAGACCTATAGTCAGAAACTCATTCAGTACTCAGAAAACCGTGATTAACGCAAATGCGGATGACTATATAAACAGCAAGAAAAATATGCCGAAAAGGAAACGAAAGTTATGGAGAGATGACAGTTCTTCCGGCGAGAGTGAATCAGACATGGATTCAGAGGGATTAAGGATCGCCAGGGGCGTAAATAAGATAGGTAGTAGTGCTTCTTTGGGGAAGTATGACGTAAAGACGAAGAGGAGGGTGCCCCCGAGTTCTTATGACGAGGAGAGTGACCTTTCGGAACAGGTTGAATTGATCAGGTATGAACTAAATAAGAGGAAGATGACCGAGAATGAGCAGCAGAAAAGTGAGGAAGATACGTTACTTAGTCAGAAAAGATTTGATGAGTGTGGTATATCGCCACTGACAATCAAAGCACTTTCTTCAGCTGGTTATATTCGCATGACACGAGTTCAAGAGGCTAGCCTTTCTGTTTGCCTTGAGGGCAAGGATGCTTTAGTCAAAGCTAAAACTGGCACTGGGAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTCTTAAGGCAGTGAGTGTAAATGTCCCTCAACGTGTGCCTCCAATACTTGTCCTGATCCTCTGCCCTACCAGAGAACTTGCAATTCAACTCACTGCAGAATTAAAAGTTCTACTCAAGTATCATGATGGAATTGGAGTTCAGACTCTAATAGGAGGTATTCGATTCAAAGACGACCAAAAACGTCTTGAATCAGATCCATCGCAGATCATTGTTGCTACTCCAGGTAGGTTGCTGGATCATATCGAGTACAAGTCTGGAATATCTCTGCAGTTGATGGGTTTGCAGATGCTTATACTTGATGAAGCTGATCATTTATTGGACCTGGGCTTTCGAAAGAGTGTAGAAAAGCTTGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTGCTATTTTCTGCAACCCTTCCAAAGGAGGTCCGGCGTATATCTCAACTTGTTTTGAAAAGGGATCACACATATATTGACACAGTGGGGATAAATAGTGTGGAAACTCCTGTGAAAGTAAAGCAGTATTATCTTGTTGCTTCTCATGAATCTCATTTTCAAATATTGCACCATATTTTGAAGGAGCACATCTTGCAAGCACCTGATTATAAGGTTATCATTTTCTGTATAACTGGGATGGTGACTTCACTCTTGTATCAACTTCTTCGGGAGATGAAAATGAATGTTAGGGAGATACATTCCCGAAAACCTCAACTTTATCGAACTCGCATATCGGATGAGTTCAAGGAATCCAAACAACTGATTCTTATCTCATCTGATGTTTCATCCCGCGGAATGAATTATCCTGATGTTAGCTTAGTCATCCAGGTGGGTATTCCTACTGACCGAGAACAATATATCCATCGTGTTGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAATGCATAATGTTAATTGCTCCATGGGAAGAGTACTTTTTAGATGAAATCAAAGATCTCCCTCTCACGAGATTCCCTTTACCAGATATAGATCCTGAGACAAAGCTTAAGGTAGAAAATTCAATGGCAAAGATTGATAACGACGTCAAAGAATCAGCTTATCACACGTGGCTTGGTTATTATAATTCGATAAGGGAAATCGGGAGAGACAAAATCACTCTAGTTGAGCTGGCGAACCAATTTTCGGAATCAATTGGGTTGCAGAGGCCTCCTTCTATCTTCAGGAAGACTGCACTAAAGATGGGATTGAAAGACATTCCTGGCATCAGAATACGTAGATAG	2406	0.4393	MSSSIVAERSRALSKILCNFILVRNMGGGPRTFPGGVNKWKWKRMHEKRARDKERRLLEQEKQLYQARIRSHIRVKLAGKPDTSSATHSPMAPEDHIKALANRFMKEGAEDLWNRNDGPLKPPPPRLREFPGSSRRRGSISSPVDPRKLVPEGRHMLSDRQNKNLMNTSRNSTHTRDYSTQSRRRFQRNESSSEDEDSDSGLERNPTRPIVRNSFSTQKTVINANADDYINSKKNMPKRKRKLWRDDSSSGESESDMDSEGLRIARGVNKIGSSASLGKYDVKTKRRVPPSSYDEESDLSEQVELIRYELNKRKMTENEQQKSEEDTLLSQKRFDECGISPLTIKALSSAGYIRMTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAVSVNVPQRVPPILVLILCPTRELAIQLTAELKVLLKYHDGIGVQTLIGGIRFKDDQKRLESDPSQIIVATPGRLLDHIEYKSGISLQLMGLQMLILDEADHLLDLGFRKSVEKLVDCLPRQRQSLLFSATLPKEVRRISQLVLKRDHTYIDTVGINSVETPVKVKQYYLVASHESHFQILHHILKEHILQAPDYKVIIFCITGMVTSLLYQLLREMKMNVREIHSRKPQLYRTRISDEFKESKQLILISSDVSSRGMNYPDVSLVIQVGIPTDREQYIHRVGRTGREGKEGECIMLIAPWEEYFLDEIKDLPLTRFPLPDIDPETKLKVENSMAKIDNDVKESAYHTWLGYYNSIREIGRDKITLVELANQFSESIGLQRPPSIFRKTALKMGLKDIPGIRIRR	801

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr9g00783	801	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	560	730	IPR001650	-
	Accr9g00783	801	SMART	ultradead3	351	564	IPR014001	-
	Accr9g00783	801	CDD	SF2_C_DEAD	561	694	-	-
	Accr9g00783	801	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	363	546	IPR014001	-
	Accr9g00783	801	MobiDBLite	consensus disorder prediction	177	203	-	-
	Accr9g00783	801	MobiDBLite	consensus disorder prediction	207	230	-	-
	Accr9g00783	801	SMART	helicmild6	604	685	IPR001650	-
	Accr9g00783	801	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	409	702	IPR027417	-
	Accr9g00783	801	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	332	360	IPR014014	GO:0003724
	Accr9g00783	801	PANTHER	RNA HELICASE	296	730	-	-
	Accr9g00783	801	MobiDBLite	consensus disorder prediction	160	176	-	-
	Accr9g00783	801	Pfam	Helicase conserved C-terminal domain	579	684	IPR001650	-
	Accr9g00783	801	MobiDBLite	consensus disorder prediction	112	261	-	-
	Accr9g00783	801	Coils	Coil	43	63	-	-
	Accr9g00783	801	Gene3D	-	556	784	IPR027417	-
	Accr9g00783	801	Pfam	DEAD/DEAH box helicase	356	534	IPR011545	GO:0003676\|GO:0005524
	Accr9g00783	801	MobiDBLite	consensus disorder prediction	241	261	-	-
	Accr9g00783	801	Gene3D	-	309	548	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr9g00783	Accr-Chr9	9151206	9155994	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr9g00783	334	710	Eukaryotic Initiation Factors Gene Family	AT3G19760	29.367	7.57e-45	165

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr9g00783	-		-	pcin:129284459	1418.29