Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00770 ATGGCGACGTCTAGGTCACAGGATCCTTCCTCCGACGACATAGTCGATTCGACACCGTTCATAGCAAATTCAGGTGGCTCCTCCGATGAATTGAATTCTGGCCGTCGCTTTGTTCGCAGGCAGAGCCTGCGCCAAGCGGCTCGGTTCCTGAGGCAAGCCAGTGGCCGGAGGATGATGCGCGAGCCATCGATGCTAGTCAGAGAGACTGCAGCCGAGCAATTGGAGGAGAGACAGGGAGATTGGGCTTATTCTAAACCCGTTGTGATCCTTGATATTATATGGAACTTCGTCTTTGTTGTCGGGGCTACTACAGTTTTAATTTTGAGTCGAAGCGAGTCGCCGAGCATGCCTTTGAGTTTGTGGATTGCGGGCTACGCTCTGCAATGCATCCTTCACATGTTCTGCGTCTGCGTTGAATATAGGAGGCGGAGGCGGCTCCGGCGGCGCCAGTATCTGCCATCCTTGGATGCAGTGCACGGAAGGACAGGCAGCGGTGAGAATCTGAGTCCGGGTTCAAGGGATGGTTCTGGGCACTATGTGACATTGGCGCAATTCAACGAGGAGGGTTCAAGTGTAGCGAAGCATTTGGAGTCAGCAAACACCATGTTTTCATTTATCTGGTGGATCATTGGATTTTACTGGGTATCAGCTGGTGGTCAATCTTTAGTCCTTGATTCTCCATTATTATACTGGTTATGTATAGCTTTCCTGGGTTTTGACGTTTTCTTTGTTGTATTCTGTGTTGCTCTGGCATTCATCATTGGTATTGCTGTATGCTGTTGTCTTCCATGTATTATTGCATTACTATATGCTGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAGCAGTTGGCTAAGTTCAAATTCAGAAGAATTGACAATGATGAGAAACTTGCTGGTAATGTACAAGAACCAGTTGGTGGAATAATGACTGAATGCGGCACTGATTCACCGAGTGAACACATTCTTTCTGAGGAGGATGCGGAATGCTGCATCTGTCTATCTGCTTATGATGACGGTGTTGACCTTAGAGAACTTCCTTGTGGCCACCATTTTCACTGTGCCTGTGTAGACAAGTGGCTGCACATTAATGCTACTTGTCCTCTCTGCAAGTATAACATCTTGAAGAGAATCAACCAAGAGGAAGCGTAG 1158 0.4767 MATSRSQDPSSDDIVDSTPFIANSGGSSDELNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMLVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVVGATTVLILSRSESPSMPLSLWIAGYALQCILHMFCVCVEYRRRRRLRRRQYLPSLDAVHGRTGSGENLSPGSRDGSGHYVTLAQFNEEGSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLVLDSPLLYWLCIAFLGFDVFFVVFCVALAFIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLAKFKFRRIDNDEKLAGNVQEPVGGIMTECGTDSPSEHILSEEDAECCICLSAYDDGVDLRELPCGHHFHCACVDKWLHINATCPLCKYNILKRINQEEA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00770 385 SMART ring_2 332 372 IPR001841 -
Accr9g00770 385 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Accr9g00770 385 MobiDBLite consensus disorder prediction 1 31 - -
Accr9g00770 385 Pfam Ring finger domain 331 373 IPR001841 -
Accr9g00770 385 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Accr9g00770 385 MobiDBLite consensus disorder prediction 1 32 - -
Accr9g00770 385 SUPERFAMILY RING/U-box 323 379 - -
Accr9g00770 385 PANTHER TARGET OF ERK KINASE MPK-1 53 377 - -
Accr9g00770 385 CDD RING-H2_RNF6-like 331 373 - -
Accr9g00770 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 382 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00770 Accr-Chr9 9075921 9078970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00770 22 383 C3H Transcription Factor Family AT1G68070 47.397 8.05e-113 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00770 - - qsa:O6P43_034207 604.364