Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00742 ATGCAGTCAGAACCAAGCTTGGGAATGATGGGGGGTGGTGGTTTTAACGGAGACGTAGCTGCTTCCGGTGACCATCTCCGGCAACTGAAGGCGGAGATAGCCACCCACCCTCTCTATGACCAGCTTCTCGCTGCACACATCTCTTGCTTGCGTGTCGCCACCCCCATCGATCAGCTTCCACTCATCGACGCTCAGTTATCGCAGTCCCACCATATCCTCCGATCATACGCGTCCCAGCAAATCCATGCCCTCTCACTACCTGAGCGTCAGGACCTTGACAATTTCCTGGCACAATATTTGTTAGTTTTGTGTACTTTCAAAGAACAGCTGCAACAACATGTCAAAGTCCATGCCGTCGAAGCCGTCATGGCTTGCCGTGATATTGAAAATACCCTACAAGCCCTCACTGGAGTAAGTTTGGGAGAGGGAAGTGGTGCAACAATGTCAGATGATGAGGATGATTTGCCAATGGATTTCTCTTTAGACCAATCAGGCGCTGAAGGACACGACATGATGGGATTTGGTCCATTGCTACCTACGGAATCTGAAAGGTCACTCATGGAAAGAGTTCGTCAGGAGCTCAAGATTGAGCTCAAGCAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATACTAAGGAAAAGAAGAGCAGGCAAGTTACCTGGAGACACAACCTCAGTGTTGAAGAACTGGTGGCAGCAACATTCCAAGTGGCCCTACCCCACTGAAGATGACAAGGCAAAACTAGTGGAGGAGACGGGTCTGCAGCTGAAGCAGATCAATAATTGGTTCATAAACCAAAGGAAACGCAATTGGCACAGCAACTCTCAATCAGTCACCTCTTTGAAGTCCAAGCGCAAGAGATAG 873 0.4891 MQSEPSLGMMGGGGFNGDVAASGDHLRQLKAEIATHPLYDQLLAAHISCLRVATPIDQLPLIDAQLSQSHHILRSYASQQIHALSLPERQDLDNFLAQYLLVLCTFKEQLQQHVKVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLPMDFSLDQSGAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00742 290 Pfam KNOX2 domain 88 136 IPR005541 GO:0003677|GO:0005634
Accr9g00742 290 Pfam Homeobox KN domain 233 272 IPR008422 GO:0003677|GO:0006355
Accr9g00742 290 SUPERFAMILY Homeodomain-like 215 280 IPR009057 -
Accr9g00742 290 SMART KNOX2_2 82 137 IPR005541 GO:0003677|GO:0005634
Accr9g00742 290 FunFam homeobox protein knotted-1-like 3 isoform X1 214 275 - -
Accr9g00742 290 SMART HOX_1 215 280 IPR001356 GO:0003677
Accr9g00742 290 SMART KNOX1_2 27 71 IPR005540 GO:0003677|GO:0005634
Accr9g00742 290 ProSiteProfiles ELK domain profile. 193 213 IPR005539 GO:0003677
Accr9g00742 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 277 - -
Accr9g00742 290 ProSiteProfiles 'Homeobox' domain profile. 213 276 IPR001356 GO:0003677
Accr9g00742 290 CDD homeodomain 216 277 IPR001356 GO:0003677
Accr9g00742 290 Gene3D - 212 286 - -
Accr9g00742 290 Pfam KNOX1 domain 29 70 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00742 Accr-Chr9 8699652 8703436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00742 4 289 Homeobox Transcription Factor Family AT1G62990 79.310 9.24e-174 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr9g00742 KNOX2 4.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00742 - - jre:108990690 515.768