Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00640 ATGGAGAGGCACAAATGCAAGCTTTGCTCTCGAACGTTCGCTAATGGCAGAGCATTAGGTGGCCACATGAAGGCTCACTTAACCTCTCTTCCTCTTCCTCCTCCCAAGCCCCACCCTCTGATCACTTCTTCAACACCTTCCTTCTCTTATTCCTCTTCCGACGACGACAGAGAACAACAAGTTGAAGTAGTTCCGTCTTACAGAGAATCTGACGAAAAGGCTTTGAGTTATGCTTTGAGGGAGAATCCAAGGAAAAATTTCAGGTTCTCAGATCCTGAGTTCTCTTTCGCGGTTGATGCTGCCTCCTTCGTCGTCGTCCAAGACAGAGAAAGCGAGACCGAGTCAAAGAATAATCCGACTCGCCGGCGATCCAAGCGAAGCCGAAAATCCTGCGTTGGAGGAGCTATACAGAAATTTCAAGTGACCAAGGCCAAGTCAAATTTGACTGAGTCGCCGCCGCCGCCGACGGAGCCAGAACCGGTGAGCTCGGTTTCTGATACTTCACCGGATGAAGATGTTGCTCTGTGTCTCATGATGCTTTCGAGGGACCGATGGATGAGAAACGACGTCGTGGAACAAGATCAAGTGGAGAGATCAAAGGAACCGGAAGAGATCAAGTTGAAGAGGAAGCATCAATCGGGTAACACTAAGAAAACTTGTCGATCTTCACGCGCATTGGACACACACAATAGGACCTACCTTCCTGAAGAAGCAGAGACGAACAAAATTGCAGGTAACGATAGAATTTTCGAATGCCCATTCTGTTACAAAGTGTTTGGGTCAGGACAAGCACTCGGTGGTCACAAGAGATCCCACCTCCTACCACCTTCGTCGTCAATTACTATCCACCCTGCTAAATGTTCTATAGATCTCAACCTGCCAGCTCCGGCAGAAGAAGATGATGAACTAAGTGTGGTTTCTGATGCGTAA 930 0.4828 MERHKCKLCSRTFANGRALGGHMKAHLTSLPLPPPKPHPLITSSTPSFSYSSSDDDREQQVEVVPSYRESDEKALSYALRENPRKNFRFSDPEFSFAVDAASFVVVQDRESETESKNNPTRRRSKRSRKSCVGGAIQKFQVTKAKSNLTESPPPPTEPEPVSSVSDTSPDEDVALCLMMLSRDRWMRNDVVEQDQVERSKEPEEIKLKRKHQSGNTKKTCRSSRALDTHNRTYLPEEAETNKIAGNDRIFECPFCYKVFGSGQALGGHKRSHLLPPSSSITIHPAKCSIDLNLPAPAEEDDELSVVSDA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00640 309 SUPERFAMILY beta-beta-alpha zinc fingers 3 272 IPR036236 -
Accr9g00640 309 MobiDBLite consensus disorder prediction 107 169 - -
Accr9g00640 309 Gene3D Classic Zinc Finger 181 278 - -
Accr9g00640 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Accr9g00640 309 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Accr9g00640 309 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Accr9g00640 309 MobiDBLite consensus disorder prediction 29 69 - -
Accr9g00640 309 Pfam C2H2-type zinc finger 3 27 - -
Accr9g00640 309 Pfam C2H2-type zinc finger 250 272 - -
Accr9g00640 309 MobiDBLite consensus disorder prediction 196 210 - -
Accr9g00640 309 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 309 IPR044303 GO:0006355
Accr9g00640 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 272 IPR013087 -
Accr9g00640 309 SMART c2h2final6 250 272 IPR013087 -
Accr9g00640 309 SMART c2h2final6 4 26 IPR013087 -
Accr9g00640 309 MobiDBLite consensus disorder prediction 55 69 - -
Accr9g00640 309 MobiDBLite consensus disorder prediction 196 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00640 Accr-Chr9 7385659 7386588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00640 1 306 C2H2 Transcription Factor Family AT3G60580 37.389 1.30e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr9g00640 zf-C2H2_6 3.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00640 - - qsa:O6P43_034089 295.819