Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00617 ATGGTTGAAAAGGAGGATCTTGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAATACTCCTCCTATTCCTCTTCAGCTCAATCTCCTCCCTTCTTCTTCTTCCCATGCTGCCTCCGATAATCTTCACAAACCCTCTTGGAACGATGCCTTCACTTCCTCAGATCGAGATTCTGAAACATGCAGATTCGAAGGTCGATCCTTCCTGCGAGGAATCGACGTTAATCGGTTGCCTTCCGGCGGCGACTGCGAAGAGGAGGCCGGTGTTTCGTCTCCGAACAGCACGATCTCCAGCGTGAGTGGCAAGAGAAGTGAGAGAGAGCCACACGGAGAAGACCACGACGCCGACAGAGACTGTTCTCGAGGAATCAGTGATGAAGAAGACGGCGAAACCTCCCGCAAAAAACTCAGGCTCTCAAAAGATCAATCCGCTATTCTCGAAGAAAGCTTCAAAGAACACAATACCCTCAATCCCAAGCAAAAGATGGCACTTGCAAAGCGGCTAGGCCTTCGACCAAGACAAGTAGAGGTCTGGTTTCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACAGAGGTAGACTGTGAGTTCTTGAAGAGATGCTGCGAGAATCTAACGGAAGAGAACAGGCGGTTGCAGAAGGAAGTTCATGAGCTTAGAGCACTGAAACTTTCCCCACAACTGTACATGCAAATGACCCCACCCACAACCCTCACCATGTGCCCCTCATGTGAGCGAGTCGCCGTGCCGCCCTATGCCGCCGTTGGAGGCAACCGACACCACCCAATGGCCCAGCCTCACGCCCGGTCCATCCCAGTCGGCCGTTGGGCCGCTGCTGCAGCTCCCATAGCCCACCGAGCCTTCGATGTCCTCCACCCGAGGTCGTGA 885 0.5322 MVEKEDLGLSLSLSFPHNTPPIPLQLNLLPSSSSHAASDNLHKPSWNDAFTSSDRDSETCRFEGRSFLRGIDVNRLPSGGDCEEEAGVSSPNSTISSVSGKRSEREPHGEDHDADRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVHELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAAVGGNRHHPMAQPHARSIPVGRWAAAAAPIAHRAFDVLHPRS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00617 294 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Accr9g00617 294 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Accr9g00617 294 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Accr9g00617 294 MobiDBLite consensus disorder prediction 1 20 - -
Accr9g00617 294 MobiDBLite consensus disorder prediction 101 137 - -
Accr9g00617 294 SMART HOX_1 130 192 IPR001356 GO:0003677
Accr9g00617 294 MobiDBLite consensus disorder prediction 30 56 - -
Accr9g00617 294 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Accr9g00617 294 FunFam Homeobox-leucine zipper protein 18 116 193 - -
Accr9g00617 294 SUPERFAMILY Homeodomain-like 121 189 IPR009057 -
Accr9g00617 294 MobiDBLite consensus disorder prediction 30 53 - -
Accr9g00617 294 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
Accr9g00617 294 MobiDBLite consensus disorder prediction 73 137 - -
Accr9g00617 294 Gene3D - 136 186 - -
Accr9g00617 294 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Accr9g00617 294 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
Accr9g00617 294 CDD homeodomain 132 189 IPR001356 GO:0003677
Accr9g00617 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 22 250 - -
Accr9g00617 294 Coils Coil 187 221 - -
Accr9g00617 294 Pfam Homeodomain 132 186 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00617 Accr-Chr9 7156926 7158315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00617 1 294 Homeobox Transcription Factor Family AT5G47370 61.364 1.91e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr9g00617 HD-ZIP_N 2.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00617 K09338 - vvi:100246436 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00617 9 7156926 7158315 Accr10g00392 10 6248735 6249843 CCT