Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00585 ATGCGTTTAGCTATGGAGCTTCATTCTAAGTTACAAGTAGTTCTCGTCTGCGTGATGCTGCTCTTCCCTGCGTTTTGCATCTCCCAAGACTTGATATCCTCCAGAGCCACATATTATGGTAGCCCTGATTACTATGGAAATCCAAGAGGAGCTTGTGGGTATGGAGATTATGGAAGGACTGTGAATGATGGGAGTGTTGCAGGCGTGTCTGGACTCTGGAACAAAGGCTCTGGATGCGGTGGCTGCTATCAAGTAAGGTGTACGAATGCGATATACTGTGATGAATACGGGTCGTTGGTGGTGGCAACAGACTACGGTGAAGGAGACAGAACAGACTTCGTAATGAGTCCACGTGCCTTCTGGAGAATGGGACGGAGTCCAGAAGCATCAGCGGAACTGTTGAAATACGGCGTCGTTGATGTGCAGTACACAAGGGTGTCATGCGCATATGCCGGCGCCAACACGCTTATCAGAATCCACGAGACAAGCAAATTCCCAGACTACCTTGCTCTGGTCGTTCTCTACGTGCCTGGACAATTCGATGTGGCTTCCGTTGAAATATTCCAGGTTGGTGGAAATGAATGGAGGACGATGCGAAGAGCGTTTGGAGCAGTGTTTGACATACTCGACGCCCCACGTCAACCGATTATTGTGACGCTGCACCTGATTGGGAGCGCAGGGCGTTATTTGGTAGAGTCCAAGAGTGCCATTCCCAGGGATTGGAAGATTGGAGCTTCTTATGACACCCAACTTCACATATAG 762 0.4948 MRLAMELHSKLQVVLVCVMLLFPAFCISQDLISSRATYYGSPDYYGNPRGACGYGDYGRTVNDGSVAGVSGLWNKGSGCGGCYQVRCTNAIYCDEYGSLVVATDYGEGDRTDFVMSPRAFWRMGRSPEASAELLKYGVVDVQYTRVSCAYAGANTLIRIHETSKFPDYLALVVLYVPGQFDVASVEIFQVGGNEWRTMRRAFGAVFDILDAPRQPIIVTLHLIGSAGRYLVESKSAIPRDWKIGASYDTQLHI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00585 253 Pfam Lytic transglycolase 66 143 IPR009009 -
Accr9g00585 253 Gene3D - 25 149 IPR036908 -
Accr9g00585 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 249 IPR007117 -
Accr9g00585 253 CDD DPBB_EXLB_N 32 148 - -
Accr9g00585 253 SUPERFAMILY Barwin-like endoglucanases 17 152 IPR036908 -
Accr9g00585 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Accr9g00585 253 PANTHER EXPANSIN-B3 18 251 - -
Accr9g00585 253 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Accr9g00585 253 Gene3D - 150 253 IPR036749 -
Accr9g00585 253 Pfam Expansin C-terminal domain 158 237 IPR007117 -
Accr9g00585 253 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Accr9g00585 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Accr9g00585 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Accr9g00585 253 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Accr9g00585 253 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00585 Accr-Chr9 6778972 6780005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00585 5 251 Expansin Gene Family AT4G17030 50.806 6.07e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00585 - - gmx:100779487 328.176