Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00584 ATGGAGCTTCATTCTAAATACCAAGTAGCACTTGTTTGCGTGCTGCTCTTACCAGCACTATGCTTATCCCAAGACTTCACAGACTCCAGAGCAACCTATTACAGTACCCCCGATGGTTATGGAACTTCTACCGGTGCTTGTGGATATGGAAATTACGGGAGAAGTGTGAACCACGGGAGGGTTGCCGGCGTGGCTGGGTTATGGAGAGGTGGCGGTGGATGCGGTGCTTGCTACCAAGTAAGGTGTAAGAATTCAAAATTATGTGATAACTATGGAACCATGTTAGTAGCAACAGACTATGGAGCAGGAGACAGAACTGACTTCATTATGAGTCCAAATGCTTTCTCTAAACTGGGACGAAACCCAAGTGCATCGGCCGAGCTCAAGAAATACGGCGTCGTTGACATCGAATACAGGAGGGTACCCTGTGCATATGCAGGTAACAACGAGCGGATCAAGATCCACGAGTCCAGTAATTACCCAGATTACCTTGCCATCGTCATTCTTTACGTCCCCGGCATGAACGACGTCACTGCCGTTGAGATCTATGACGGTTATAGCTACGAATGGAGGCCAATGAGGAGAGTGTACGGGGCAGTGTTTGATATAGTTGCCGCACCAAGTGGACCATTGACGATGAGGCTGCAATTCGATGGAAGAAAAGGTTGGGTTCAGTCCAAGACTGCCATTCCAGGAGATTGGAAGATTGGAGCTTCTTATGACTCCCAAGTTCATGTCTAA 741 0.4804 MELHSKYQVALVCVLLLPALCLSQDFTDSRATYYSTPDGYGTSTGACGYGNYGRSVNHGRVAGVAGLWRGGGGCGACYQVRCKNSKLCDNYGTMLVATDYGAGDRTDFIMSPNAFSKLGRNPSASAELKKYGVVDIEYRRVPCAYAGNNERIKIHESSNYPDYLAIVILYVPGMNDVTAVEIYDGYSYEWRPMRRVYGAVFDIVAAPSGPLTMRLQFDGRKGWVQSKTAIPGDWKIGASYDSQVHV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00584 246 SUPERFAMILY Barwin-like endoglucanases 11 148 IPR036908 -
Accr9g00584 246 Gene3D - 19 143 IPR036908 -
Accr9g00584 246 Pfam Expansin C-terminal domain 151 231 IPR007117 -
Accr9g00584 246 SUPERFAMILY PHL pollen allergen 152 242 IPR036749 -
Accr9g00584 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 242 IPR007117 -
Accr9g00584 246 Gene3D - 144 243 IPR036749 -
Accr9g00584 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Accr9g00584 246 Pfam Lytic transglycolase 61 138 IPR009009 -
Accr9g00584 246 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Accr9g00584 246 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Accr9g00584 246 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Accr9g00584 246 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Accr9g00584 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Accr9g00584 246 PANTHER EXPANSIN-B3 15 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00584 Accr-Chr9 6770718 6771617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00584 4 244 Expansin Gene Family AT4G17030 51.230 2.00e-84 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00584 - - gmx:100779487 298.516