Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr9g00580 | ATGGGGTTTCATTCTAAATACCAAGTGTTCCTTGTTTGTGTGTTGCTTTTGCCTGCTCTATGCCTCTCCCAATTCACAGACTCCAGAGCCACCTTTTACTCTACCTCTGATGGCAGTGGAACCCCAACCGGAGCTTGTGGATTTGGCGATTACGGGAGGACTGAAAACTCAGGGAGGGTGGCCGGAGTGTCTGATGCGCTATGGAGAGGCGGCGCCGGATGCGGTGCCTGCTACCAAGTAAGGTGCAAGGATACACAATTATGCAGTACGGACGGGGTGACGATAGCGGCAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTTATGAGTCTTAACGGTTTCTTAAGACTTGGAGTGAACTCGGCTGCTTCGGAACAGCTCAGGAAAAACGGCACCGTTGACATCCAATACAGGAGGGTCCCATGCGCTTTCGATGGATCCAACGTTAAGATCAAGATCCACGAGAACAGCAGATTCCCTGACTACCTCGCTATTGCCGTCATCTACGTGCCTCGCCCCAATGACGTCGTTTCCGTTCAGATATCCAATAATAATGGTGGGAATTGGAGCCCACTGGGGAGATCGTTTGGGGCAGTGTTTGATTTAGCAAATGCGCCAAGTGGACCATTTAAGGTGAGGGTGCAATTCAGAGGGAGCCAGACTTGGGTGGAGTCGCCCAACAATGTGATTCCAGCTAACTGGAACGTTGGAGCTATTTATGACTCTGGAATTCATGCCTAA | 744 | 0.5067 | MGFHSKYQVFLVCVLLLPALCLSQFTDSRATFYSTSDGSGTPTGACGFGDYGRTENSGRVAGVSDALWRGGAGCGACYQVRCKDTQLCSTDGVTIAATDMGSGDRTDFVMSLNGFLRLGVNSAASEQLRKNGTVDIQYRRVPCAFDGSNVKIKIHENSRFPDYLAIAVIYVPRPNDVVSVQISNNNGGNWSPLGRSFGAVFDLANAPSGPFKVRVQFRGSQTWVESPNNVIPANWNVGAIYDSGIHA | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr9g00580 | 247 | Gene3D | - | 19 | 144 | IPR036908 | - | |
| Accr9g00580 | 247 | PRINTS | Expansin/Lol pI family signature | 64 | 82 | IPR007118 | GO:0005576 | |
| Accr9g00580 | 247 | PRINTS | Expansin/Lol pI family signature | 42 | 60 | IPR007118 | GO:0005576 | |
| Accr9g00580 | 247 | PRINTS | Expansin/Lol pI family signature | 24 | 39 | IPR007118 | GO:0005576 | |
| Accr9g00580 | 247 | PRINTS | Expansin/Lol pI family signature | 229 | 243 | IPR007118 | GO:0005576 | |
| Accr9g00580 | 247 | PRINTS | Expansin/Lol pI family signature | 131 | 147 | IPR007118 | GO:0005576 | |
| Accr9g00580 | 247 | PRINTS | Expansin/Lol pI family signature | 190 | 204 | IPR007118 | GO:0005576 | |
| Accr9g00580 | 247 | Pfam | Expansin C-terminal domain | 150 | 232 | IPR007117 | - | |
| Accr9g00580 | 247 | SUPERFAMILY | Barwin-like endoglucanases | 12 | 147 | IPR036908 | - | |
| Accr9g00580 | 247 | Pfam | Lytic transglycolase | 62 | 138 | IPR009009 | - | |
| Accr9g00580 | 247 | SUPERFAMILY | PHL pollen allergen | 149 | 243 | IPR036749 | - | |
| Accr9g00580 | 247 | Gene3D | - | 145 | 247 | IPR036749 | - | |
| Accr9g00580 | 247 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 162 | 243 | IPR007117 | - | |
| Accr9g00580 | 247 | CDD | DPBB_EXLB_N | 26 | 143 | - | - | |
| Accr9g00580 | 247 | PANTHER | EXPANSIN-B3 | 15 | 245 | - | - | |
| Accr9g00580 | 247 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 43 | 148 | IPR007112 | - | |
| Accr9g00580 | 247 | SMART | dpbb_1 | 60 | 138 | IPR007112 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr9g00580 | Accr-Chr9 | 6730000 | 6731502 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr9g00580 | 4 | 245 | Expansin Gene Family | AT4G17030 | 45.714 | 1.99e-72 | 219 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr9g00580 | - | - | gmx:100779487 | 257.299 |