Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00579 ATGGGGCTTCATTCCAAATACCAAGTGGTCCTTGTTTGTGTATTGCTCTTGCCTGCTCTATGCCTCTCCCGATTTACAAACTCCAGAGCCACCTATTACAATACCTCTGATGGCAGTGGCACCCCAACTGGAGCTTGTGGATTTGGCGATTACGGTAGGACTGAAAACTCAGGGAGGGTGGCCGGCGTGTCTGGGCTATGGAGAGGCGGCGCTGGATGCGGCGCATGCTATCAAGTAAAGTGCAATGATACAAAATTATGCAGAACGGACGGGGTAACGATAGTGGTAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTTATGAGTCTTAACGGTTTCTTAAGACTTGGATTGAACGCCAATGCTTCGGACGAGCTCAGGAAGAAGGGCACCGTTGATATCCAATACAGGAGGGTCCGATGCACTTTCGGTGGATCCAACGTTAAGATCAAGATCAACGAGAACAGCAGATTCCCTGACTACCTTGCTATCGCCGTCATCTACGTTCCTGGCTCCAAGGACGTCGTTTCCTTTCAGATATCCAACAATAATGGGAGAGATTGGAAGCCATTGAGAAGAGTTTTTGGGGGAGTGTTTGATTTAGAAAATGCGCCAAGTGGACCATTTAAGGTGAGGGTGCAATTCAGTAGGAGCCAGACTTGGGCGGAGTCGCCCAACAATGTGATTCCAGCTGACTGGAAGGTTGGAGCTATTTATGACTCCAGAATTCATGTAGATCATGCGACGTCGTAA 756 0.4868 MGLHSKYQVVLVCVLLLPALCLSRFTNSRATYYNTSDGSGTPTGACGFGDYGRTENSGRVAGVSGLWRGGAGCGACYQVKCNDTKLCRTDGVTIVVTDMGSGDRTDFVMSLNGFLRLGLNANASDELRKKGTVDIQYRRVRCTFGGSNVKIKINENSRFPDYLAIAVIYVPGSKDVVSFQISNNNGRDWKPLRRVFGGVFDLENAPSGPFKVRVQFSRSQTWAESPNNVIPADWKVGAIYDSRIHVDHATS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00579 251 SUPERFAMILY Barwin-like endoglucanases 11 146 IPR036908 -
Accr9g00579 251 Pfam Expansin C-terminal domain 149 231 IPR007117 -
Accr9g00579 251 PANTHER EXPANSIN-B3 15 244 - -
Accr9g00579 251 CDD DPBB_EXLB_N 26 142 - -
Accr9g00579 251 Pfam Lytic transglycolase 60 137 IPR009009 -
Accr9g00579 251 SUPERFAMILY PHL pollen allergen 148 242 IPR036749 -
Accr9g00579 251 Gene3D - 143 243 IPR036749 -
Accr9g00579 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Accr9g00579 251 Gene3D - 20 142 IPR036908 -
Accr9g00579 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 242 IPR007117 -
Accr9g00579 251 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Accr9g00579 251 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Accr9g00579 251 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Accr9g00579 251 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00579 Accr-Chr9 6697128 6699461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00579 4 244 Expansin Gene Family AT4G17030 44.534 8.45e-69 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00579 - - ccaj:109800044 266.929