Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00578 ATGGAACTTCATTCTAAATACCAAGTAGTCCTTGTGTGGGTGATGTTGCTCTTACCCACATTATGTACCTCCCAAGACTTTACATCCTCCAGAGCTACCTATTACGGCAGCCCTGATAACTATGGAACTCCAACTGGAGCTTGTGGATATGGCGAATACGGAAGAACTGTGAACGACGGGAGTGTCGCCGGCGTGTATGGGCTCTGGAAGAGCGGCTTTGGCTGTGGTGCTTGCTACCAAGTGAGGTGCAAAAACTCACAAGTATGCGATGAATATGGGACGTCCGTGGTGGTGACGGACTACGGTCAAGGAGACAGGACAGACTTTGTGATGAGTCCACGTGCGTACGCGAGAATGGGAAGGAATCCAGACGCATCACAGGAGCTGTTCAAAGACGGCGTCGTAGAGGTGGAATACAGGAGGATTCCCTGCAGGTATGGGCTAAACAACGTAGTGTTCAAAGTACAGGAGCAAAGCTCATACCCTAACTACATCGCCATTCTGGTGCTGTACGTGGCGGGCCAAAGCGACATCACTGCCGTTGAGGTGCTTCAGGAGGATCGCCAGCAGTGGAGGCCGATGAGGAGGGCATACGGAGTGGTGTTTGATGCCGCGAATCCACCACGTGGCGAATTGATGTTGAGGTTCCAGGTGAGTGGGCGTGGGGGTGTGTATTGGGTTCAGGCCAAGAATGCTATTCCCAGTGACTGGAAGGCTGGACAAGCTTATGACTCTCAGGTTCAGTTAAATTAG 753 0.5193 MELHSKYQVVLVWVMLLLPTLCTSQDFTSSRATYYGSPDNYGTPTGACGYGEYGRTVNDGSVAGVYGLWKSGFGCGACYQVRCKNSQVCDEYGTSVVVTDYGQGDRTDFVMSPRAYARMGRNPDASQELFKDGVVEVEYRRIPCRYGLNNVVFKVQEQSSYPNYIAILVLYVAGQSDITAVEVLQEDRQQWRPMRRAYGVVFDAANPPRGELMLRFQVSGRGGVYWVQAKNAIPSDWKAGQAYDSQVQLN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00578 250 SUPERFAMILY Barwin-like endoglucanases 13 146 IPR036908 -
Accr9g00578 250 Gene3D - 148 249 IPR036749 -
Accr9g00578 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Accr9g00578 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Accr9g00578 250 Gene3D - 18 145 IPR036908 -
Accr9g00578 250 Pfam Lytic transglycolase 63 139 IPR009009 -
Accr9g00578 250 SUPERFAMILY PHL pollen allergen 150 245 IPR036749 -
Accr9g00578 250 CDD DPBB_EXLB_N 28 144 - -
Accr9g00578 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Accr9g00578 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Accr9g00578 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Accr9g00578 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Accr9g00578 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Accr9g00578 250 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Accr9g00578 250 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Accr9g00578 250 PRINTS Major pollen allergen Lol pI signature 154 169 IPR005795 GO:0005576|GO:0019953
Accr9g00578 250 Pfam Expansin C-terminal domain 151 234 IPR007117 -
Accr9g00578 250 PANTHER EXPANSIN-B3 14 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00578 Accr-Chr9 6681797 6682965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00578 4 249 Expansin Gene Family AT4G17030 57.661 9.88e-101 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00578 - - ccaj:109800044 372.089