Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00573 ATGGCTGACCCATCTTCCTCAGCTCGCTCTTCCAATTCCAGTCAGTTTACTTACTCCGACGGATCCTACTTCCCCATGCCTTTCCATCTTCAGCAATCTGCTTCCACGACGTCGTCTCACTATGCTTCGCCATATGTGGCGGCGTCACCGGCGGTGCCAATTCCTCCACAAGCGCCTCCGGCTGCCGTTCCCGGCGTTTACTCTTACCCACAGTATCAGCAGGCGCAGCAGTTATTCCAACGGGATGCACAGACAATCACGCCCGAGGCTCTTGAGAATGTCAAAGCAGCCATTGCTAACAGCGAGATCGAGCACAAGGCAGAGACCAAAAAGAAAGCGATTCCTCGCAAAGCTGCAGGGCAATCATGGGAGGATCCTTCGCTGACAGAATGGCCAGAGAATGATCATCGGCTGTTCTGTGGTGATCTTGGTAACGAGGTAAATGACGATGTCCTTTCGAAAGCTTTTTCGCGATTTCCTTCATTTAACATGGCCAGAGTTGTGAGGGATAAGCGGAGTGGAAAAACAAAAGGCTACGGATTTGTTAGCTTCGCGGATCCTTCTGACCTTGCTGTTGCTCTTAAAGAGATGAACGGTAAATATGTTGGGAATAGGCCGATTAAATTGTGTAAGAGTAAGTGGAAGGAGAGAACGGATTATGAAGCTCTAGACAAACACAAGAAACAATCTCGGAAGAAACCGAAACCTTCAAAAGTGGGTGTATTGCATTACTGA 735 0.4884 MADPSSSARSSNSSQFTYSDGSYFPMPFHLQQSASTTSSHYASPYVAASPAVPIPPQAPPAAVPGVYSYPQYQQAQQLFQRDAQTITPEALENVKAAIANSEIEHKAETKKKAIPRKAAGQSWEDPSLTEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYEALDKHKKQSRKKPKPSKVGVLHY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00573 244 Gene3D - 71 210 IPR012677 -
Accr9g00573 244 MobiDBLite consensus disorder prediction 221 244 - -
Accr9g00573 244 Coils Coil 91 111 - -
Accr9g00573 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
Accr9g00573 244 MobiDBLite consensus disorder prediction 228 244 - -
Accr9g00573 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Accr9g00573 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 225 - -
Accr9g00573 244 SUPERFAMILY RNA-binding domain, RBD 121 218 IPR035979 GO:0003676
Accr9g00573 244 CDD RRM_RBM42 130 212 IPR034215 -
Accr9g00573 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Accr9g00573 244 MobiDBLite consensus disorder prediction 108 128 - -
Accr9g00573 244 FunFam RNA-binding protein 42 71 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00573 Accr-Chr9 6606637 6607371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00573 117 229 Eukaryotic Initiation Factors Gene Family AT1G71770 28.319 1.02e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00573 K25079 - qsa:O6P43_011258 333.954