Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00562 ATGGAGGAACGGTATGAGCCACTGAAAGAACTTGGCTCTGGGAATTTTGGAGTGGCCAGGTTGGCGAGAGACAAGATCACCAAGGAGCTTGTTGCTGTCAAGTACATAGAAAGAGGGAAACAGATTGACGAGAAAGTTCAGAGGGAGATCATTAACCATCGATCTTTAAGGCATCCAAATATTATCAAGTTTAGAGAGGTCTTGCTGACCCCAACTCATTTAGCTATTGTCATGGAGTATGCTGCAGGCGGTGAAATCTTTGAGAGAATTTGCAATGCTGGTCGATTCAGTGAAGATGAGGCAAGATTTTTCTTCCAGCAACTAATATCTGGAGTTAGCTACTGTCACTCAATGCAAATTTGTCACAGAGATTTGAAATTGGAGAACACTCTCTTGGATGGAAGTCCAACACCTCGACTCAAAATATGTGACTTCGGTTACTCCAAGTCTGCTATACTGCACTCTCAACCAAAATCTACTGTTGGAACTCCTGCTTACATTGCTCCGGAGGTTCTGTCACGAAAGGAGTACGATGGAAAGATTGCGGATGTTTGGTCTTGTGGTGTGACGCTTTATGTCATGTTAGTGGGAGGATACCCATTTGAAGATCCTGAAGATCCTAGGAATTTCCGAAAGACCATTGGAAGAATAATGAGTGTTCAATACTCCATTCCCGACTATGTACGTGTCTCTGCGGATTGCAGACATCTTCTTTCTCGCATTTTTGTTGCCGATCCTGCCAAAAGGATAACGATCCCAGAGATAAAACAGCACCCTTGGTTTTTGAAGAACTTGCCTAAAGAGATAAATGAAGCTGAGAAAAAGGTCGATGAGGAAGGTGCAGAGAAAGGTCATCCGGGCCAGAGTGTTGAAGAAATAACGAGAATCGTCCAAGAGGCAAGGACGCCGGGGAAAGAATCCAAGGGCGGAGGGCAAGCTGGTGGTGGAGAAGGATCATTGGACGGTGATGATGATGAAGAAGAAGAACAGGAATTTGATGTTAGTGGTGAATATACTACAACAACATAA 1029 0.4402 MEERYEPLKELGSGNFGVARLARDKITKELVAVKYIERGKQIDEKVQREIINHRSLRHPNIIKFREVLLTPTHLAIVMEYAAGGEIFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPTPRLKICDFGYSKSAILHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGGYPFEDPEDPRNFRKTIGRIMSVQYSIPDYVRVSADCRHLLSRIFVADPAKRITIPEIKQHPWFLKNLPKEINEAEKKVDEEGAEKGHPGQSVEEITRIVQEARTPGKESKGGGQAGGGEGSLDGDDDEEEEQEFDVSGEYTTTT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00562 342 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Accr9g00562 342 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g00562 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Accr9g00562 342 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Accr9g00562 342 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Accr9g00562 342 Coils Coil 262 282 - -
Accr9g00562 342 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g00562 342 PANTHER SERINE/THREONINE KINASE 3 288 - -
Accr9g00562 342 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Accr9g00562 342 MobiDBLite consensus disorder prediction 274 289 - -
Accr9g00562 342 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Accr9g00562 342 MobiDBLite consensus disorder prediction 274 342 - -
Accr9g00562 342 CDD STKc_SnRK2 4 260 - -
Accr9g00562 342 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g00562 342 MobiDBLite consensus disorder prediction 319 334 - -
Accr9g00562 342 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00562 Accr-Chr9 6468041 6470692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00562 4 278 CBL-interacting serine-threonine protein kinases AT5G25110 42.308 9.13e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Accr9g00562 Pkinase 2.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00562 K14498 - tcc:18606143 557.37