Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00554 ATGCATAGCGGTAGGGGTGTGGCGGGAAGAACTCGGTCTAGACAAGGAATCGCTTGGAAACAATACTTTGATAATAATCGTAGGAAACAACCTGAAGTTGAGCTAATTTCATCCGAAGAAGACTCTGGCGATAATGTATCTGATGATGACAATGATGTGATTTTAATCAAAGATATTAAACCAGAGGAAGACAATGATAAGGAAATGTCGGAAAGAATTCAGCCTAGACAAGTACTTAATGAGAGGGAGGTGGAAATGGCGTCTCAAGAAGAATGCTCTTCAAGCGACACTACTGAATCTTCTTCTTCTGATGGTGGCGGTGGTGCTGAAGCTTCACCTCGCGGTGACGACGTCGAGGAAGGTCTCATCGGAAGCGGGAGCAGAAGCACAGCTACACCACCGCATCACAATGACGTTGAGAAATATGTTACCAGAAGCAGAGGCAGAGGTGTAGCGAGTAGAACACGTTCTCATTTTTGTGCTTCGAAATTGAAAAACACAAAAGTAGGGACATTCAATAATCCCATAAGTCTTGATGATGAGGATGAGCCAGAGCAAGAGAAAGAGGGGCATAAAACAACTATGAAGCCTGTTGATGAGGATTTAGCTTCTTCCTCAACTTCAAGCGATGAGGATTTAGCTTCTTCCTCAACCTCAAGCGATGAGGATGAAAGTCCAAAAGTTTCCCGTAAACGGAGAAGAAAAGTGTTTGATGATTTCAAGATTAGTCCGGAGCATCTCCCTGGTGAGGGAGTGGCGCCTCTTGAGAACTCAACTTCCTCAAGCATTGAGGAAAGAAATCCGAAAGTTGTGGCGAAGCCACTAAAAGTGTCATCGAAATTAGAGTCTGAGGATATGTTAGAAAGACTATGGGCTGTGATGAACATGGCTGACGAAAATCCACAAGAAACCATGAATAAGGCGTCACAGTCACCGGAGAGTTCAGAGCCTGAGGAAGATGGTAAACTATGCTCTGTCAGTTCTTCTGAAGATGAGGAAGGAATTCCAGAAGATATCAATCCAATTCTATCATTAAAGTGCACTTTTGGGACTGAGGCACCACAACCTCTTGAGAAATCAGAGTCGGAGGACGAATCTGATCTCCTATGGGCTGAGCTGGACGACTTTTTACTAAATTGTGAAGAAGATACTGATGATGAAGATGCTTCTCACCAGGTTGAAAATGGTCATACTAATGACCCAAATCCGGAAGGTGAAGAGAGTATAGCAAGTCGTTGTCGACGAGGAGATCATGTCCCTGCCATGAACGAAGAAATTGGTTTAGTGTGTATACATTGCAGGCATATAATTCGGGACATTAAGGATTGTGACCCTGAGTTTGGCAAGCATCCATCGGGAAGACCAGGTGGGAGAGACTCATACCGTCGGGGGGATTCCGACGACTCTTTCTCTGACGGCTCGCAGCATGAAAATTCTGGAATTGGTGATAAATCTAGGTTTTTAACCTATGCTTCCACTGGAACTGTGTGGGACATAGTTCCAAGAGCAAAGAAGAGGATGTACAATCACCAAAAGGAAGCCTTTGAATTTCTCTGGAAGAATCTAGCTGGTGGAATTGTTCTTGACCAGTTGGAAAAGCAATTAGATTTTTCCGGTGGAGGTGGCTGCATAATTTCTCATGCGCCTGGCACTGGCAAAACTTTCCTCACCATTGCTTTTCTCAAGGCCTTCATGAGGAGATACCCTAGTTGCAGGCCCATGATCATAGCTCCCTGCAACATTCTTGATACATGGGAGAGAGAATTAAAGAAGTGGCAAGTGGGTGATTCTGTTCCTTTTCACAATCTGAACAAGCTTGAACTTTCTGGGCTGGAGACTCAATCTGCCATAAGCCGTTTTCGTCCTCGAAGGCGCGGGCGGAGACCTAATAGAGAGGTAATCCGACGGATTAAGGCTTGTTCATGGAGAGAGGGTAAAAGCATATTAGGAATCAGCTACTCATTATTTGATAGGCTTGCTAGAAAGGGCGATGATGAATTGGTAAAGGAAGCCCTTTATGAACTTCCTGGGCTGGTGGTTTTTGATGAGGGCCACACAGCTCGCAATGACAGGAGTCTCTTGTGGGAAGCATTGTCTGATATAAAGACAAATAGACGAATATCACTCTCTGGGACTCCTTTCCAGAATAACTTTCGTGAGCTTAACAATACCATCCGCTTGGCCAAACCAAATGTACCTAAAGGCCTTAAGTTGGAATTGCTTCTGAAATCATATGACAAAGTAGAGAGCCATGGTGAAAGAACTCAGGTCATGGCTCAAATCAGAGATGTGATCAAACCGTTTGTGCATGTGCATAAGGGTACTGTGCTGGAGGAGAAACTTCCTGGGTTGGAGGAGTCAGTAGTTAGCTTAGAGCCCTCTCCGTCGCAGATGTCCATTTTTAAGTACATTCAAAAGTTAAGGGAGGACCAAGAGGGATGCTCAAACTGGTTTAGATTTGAACATTTGATGTCTGTATCTTCTGTGCATCCCTCTCTCTTTGTTGACGAGCTCACTCGAGTTCCAAAAAGTGAAAGAGTGCAATTGAATGCTATATTAGCAACACTGGATTTGTCCACAGAGGCTGGAGTTAAAACAAAGTTTGTATTGGACTTTATCAAGCAAAGCGAGCTTTTGAAGGAAAAAGTTCTGATCTTTAGCCAGTACATTCATCCGTTGGAATTTCTCGCGGAGCAGATCAACGCTCGCTTTCATTGGAGAAAAGGAGAGCAGATGATGATTATTCATGGAAAGACCGTTGAAGTGACACGACAAGCTTCCATAGATGCCTTCAATGATCCCAGTAGCAAAGCGAGGGTGATGTTAGCGTCAACGAGGGCTTGTTATGAAGGGATCAATCTGGTCGGAGCTTCAAGAGTCATTTTGCTTGATACTTTATGGAATCCCTCAGCAGAAAGGCAAGCTGTGTCTCGTGCTTATCGGCTTGGACAGAAGAAAGTTGTGTACACTTATTGTCTCATAACTGCTGGGACATGGGATGAACAGAAGCTCTGCATTCAAGCTGAGAAGGATGAATTGTCTGAGTTGGTCTTTTCTGCTTCCCATGACGCTGCCCATCGCAAGAATATGTCTCCCAATGGTTTTGAAGATAAACTTTGGGAAAACATGGGTCCTAAATTTGGGACGAAATTCACCAGGAGGAGAGTTACTGTGATACCATCTTAG 3186 0.4422 MHSGRGVAGRTRSRQGIAWKQYFDNNRRKQPEVELISSEEDSGDNVSDDDNDVILIKDIKPEEDNDKEMSERIQPRQVLNEREVEMASQEECSSSDTTESSSSDGGGGAEASPRGDDVEEGLIGSGSRSTATPPHHNDVEKYVTRSRGRGVASRTRSHFCASKLKNTKVGTFNNPISLDDEDEPEQEKEGHKTTMKPVDEDLASSSTSSDEDLASSSTSSDEDESPKVSRKRRRKVFDDFKISPEHLPGEGVAPLENSTSSSIEERNPKVVAKPLKVSSKLESEDMLERLWAVMNMADENPQETMNKASQSPESSEPEEDGKLCSVSSSEDEEGIPEDINPILSLKCTFGTEAPQPLEKSESEDESDLLWAELDDFLLNCEEDTDDEDASHQVENGHTNDPNPEGEESIASRCRRGDHVPAMNEEIGLVCIHCRHIIRDIKDCDPEFGKHPSGRPGGRDSYRRGDSDDSFSDGSQHENSGIGDKSRFLTYASTGTVWDIVPRAKKRMYNHQKEAFEFLWKNLAGGIVLDQLEKQLDFSGGGGCIISHAPGTGKTFLTIAFLKAFMRRYPSCRPMIIAPCNILDTWERELKKWQVGDSVPFHNLNKLELSGLETQSAISRFRPRRRGRRPNREVIRRIKACSWREGKSILGISYSLFDRLARKGDDELVKEALYELPGLVVFDEGHTARNDRSLLWEALSDIKTNRRISLSGTPFQNNFRELNNTIRLAKPNVPKGLKLELLLKSYDKVESHGERTQVMAQIRDVIKPFVHVHKGTVLEEKLPGLEESVVSLEPSPSQMSIFKYIQKLREDQEGCSNWFRFEHLMSVSSVHPSLFVDELTRVPKSERVQLNAILATLDLSTEAGVKTKFVLDFIKQSELLKEKVLIFSQYIHPLEFLAEQINARFHWRKGEQMMIIHGKTVEVTRQASIDAFNDPSSKARVMLASTRACYEGINLVGASRVILLDTLWNPSAERQAVSRAYRLGQKKVVYTYCLITAGTWDEQKLCIQAEKDELSELVFSASHDAAHRKNMSPNGFEDKLWENMGPKFGTKFTRRRVTVIPS 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00554 1061 MobiDBLite consensus disorder prediction 50 89 - -
Accr9g00554 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 734 IPR027417 -
Accr9g00554 1061 Gene3D - 488 766 IPR038718 -
Accr9g00554 1061 MobiDBLite consensus disorder prediction 90 107 - -
Accr9g00554 1061 MobiDBLite consensus disorder prediction 223 245 - -
Accr9g00554 1061 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 731 IPR014001 -
Accr9g00554 1061 Pfam Helicase conserved C-terminal domain 867 983 IPR001650 -
Accr9g00554 1061 SMART ultradead3 503 739 IPR014001 -
Accr9g00554 1061 Pfam SNF2-related domain 540 807 IPR000330 GO:0005524|GO:0140658
Accr9g00554 1061 MobiDBLite consensus disorder prediction 1 268 - -
Accr9g00554 1061 MobiDBLite consensus disorder prediction 159 174 - -
Accr9g00554 1061 MobiDBLite consensus disorder prediction 384 410 - -
Accr9g00554 1061 CDD SF2_C_SNF 865 994 - -
Accr9g00554 1061 MobiDBLite consensus disorder prediction 313 327 - -
Accr9g00554 1061 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 45 1043 IPR044567 GO:0080188
Accr9g00554 1061 MobiDBLite consensus disorder prediction 444 472 - -
Accr9g00554 1061 MobiDBLite consensus disorder prediction 444 482 - -
Accr9g00554 1061 MobiDBLite consensus disorder prediction 199 222 - -
Accr9g00554 1061 SMART helicmild6 894 983 IPR001650 -
Accr9g00554 1061 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 871 1031 IPR001650 -
Accr9g00554 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 1035 IPR027417 -
Accr9g00554 1061 Gene3D - 782 1045 IPR027417 -
Accr9g00554 1061 MobiDBLite consensus disorder prediction 295 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00554 Accr-Chr9 6419065 6423043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00554 874 1013 RAD5 or RAD16-like Gene Family AT5G43530 34.437 2.82e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr9g00554 SNF2_N 3.2e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00554 K10875 - jre:108991587 578.556