Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00552 ATGAAGTGCTTCTTGTTCAAATTTAAGAGAGGATCAAAATCCTCCTCAGAATCGCAGAAACGAAGACAGAAGAATCAGTCGGGTTCAAATCACGCGGTGAGTCCAACGAGTTCGCTGCCATTGCCGAGAACCTTAGCAGAATTGTACAAAGAGAAAGAGCACGATCTGAGAGTTTTCACTTTCCAAGAGCTCAGTGAGGCCACAAATGATTTCGATCGGATGCTGAAGATTGGAGAGGGGGGCTTCGGGAGCGTTTATAAAGGAACAATTAAGCCTCAAGATGGTCGAGGTGATCCTATTGTTGTTGCCATAAAAAGACTTAACGCCCATGGCTTTCAGGGGCATAAAGAATGGTTGGCAGAGGTTCAATTTCTGGGCATTGTTAATCACCCAAATTTGGTAAAACTATTGGGATACTGCTCTGAAGATGGAGAAAGAGGAATCCAACGGCTGTTAGTTTATGAATTCATGCCCAACAGGAGCCTGGAGGATCATCTTTTCAGACGGATTTTTCCCAGCTTACCGTGGAAAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTACTTTATCTACATGAGGAATTAGAGATTCAGGTAATATTCCGAGATTTCAAATCTTCCAATGTTTTATTGGACACGAACTTCCATCCAAAGCTTTCAGATTTTGGTCTTGCTAGGGAAGGTCCAATTGGTGATCAGACCCATGTGTCCACTGCGGTGGTGGGGACACATGGATATGCTGCCCCAGAATATATTGAAACGGGCCACCTAAAAGTTCAGAGTGATATATGGAGCTTTGGTGTGGTATTATATGAGATGCTTACAGGGAGGCGATCGTTAGATAGGAGTCAAACGAAAGAACAGAAGCTTCTAGAATGGGTTAAACTGTATCCTGCTGATAGTAGGAGGTTCGGCATGATAATGGACCCTCGACTCAGGAATGAGTATTCACATGGTGCTGCTCGAAAAGTAGCCAAGTTGGCAGAGAGATGCTTAAACAAGAAACCTGAAGAAAGGCCACCCATGAGTCAGGTTGTGGAAAGGTTGAAGCAAGCATTGCAGGATTCTGAAACTTCCAAAATGGCTTCTGAAACATCTCGACCTAAATTGGTCCCAAGAAGCAAATAA 1134 0.4392 MKCFLFKFKRGSKSSSESQKRRQKNQSGSNHAVSPTSSLPLPRTLAELYKEKEHDLRVFTFQELSEATNDFDRMLKIGEGGFGSVYKGTIKPQDGRGDPIVVAIKRLNAHGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSEDGERGIQRLLVYEFMPNRSLEDHLFRRIFPSLPWKTRLQIMLGAAQGLLYLHEELEIQVIFRDFKSSNVLLDTNFHPKLSDFGLAREGPIGDQTHVSTAVVGTHGYAAPEYIETGHLKVQSDIWSFGVVLYEMLTGRRSLDRSQTKEQKLLEWVKLYPADSRRFGMIMDPRLRNEYSHGAARKVAKLAERCLNKKPEERPPMSQVVERLKQALQDSETSKMASETSRPKLVPRSK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00552 377 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g00552 377 MobiDBLite consensus disorder prediction 351 367 - -
Accr9g00552 377 PANTHER OS01G0588500 PROTEIN-RELATED 19 355 - -
Accr9g00552 377 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524
Accr9g00552 377 MobiDBLite consensus disorder prediction 336 377 - -
Accr9g00552 377 Gene3D Phosphorylase Kinase; domain 1 51 156 - -
Accr9g00552 377 Gene3D Transferase(Phosphotransferase) domain 1 157 373 - -
Accr9g00552 377 SUPERFAMILY Protein kinase-like (PK-like) 54 351 IPR011009 -
Accr9g00552 377 CDD STKc_IRAK 77 353 - -
Accr9g00552 377 FunFam Serine/threonine-protein kinase BIK1 41 156 - -
Accr9g00552 377 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 157 365 - -
Accr9g00552 377 Pfam Protein kinase domain 74 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr9g00552 377 MobiDBLite consensus disorder prediction 21 39 - -
Accr9g00552 377 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00552 Accr-Chr9 6350922 6352745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00552 3 351 Glycoside Hydrolase AT3G07070 42.659 2.61e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr9g00552 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00552 - - gmx:100305403 535.028