Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00459 ATGCCGATGTACCAGCCTTCTAAACGAGATGTGGTTGCTGGCTTCGACGGTGGTGGTGACGGGCAGATTTTAGATCTGGATACCGCTGTGAAGGATGGGGTTTTAGGTGGCGTTGATGGTGGGATTGTCGGAGCTGGGGCCGGCGAGAAATTGGATCTGGGAAAAATGATTCAGGAGCTCGACTTGTCCGAAGTTCCTACGGTCTTTATCTGCCCAATCTCCCTTGAGCCAATGCAAGATCCAGTCACGCTCTGCACCGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAATTTGGGGCACCTAACCTGCCCTACCACTATGCAAGAGCTCTGGGATGATTCCATTACTCCGAATACAACTCTTTACCGTCTGATATACGCTTGGTTTTCCCAGAAGTATCTGCTGATGAAGAAGAGATCGGAAGATGTGCAGGGGAGGGCGTCAGAACTCGTGGAGACGCTGAAGAAAGTGAAGGGTCAAGCTCGAGTTCAAGCCCTCAAGGAGCTCCATGATGTGGTGGCTGCTCACTCCACTGCCCGCAAGACAGTTATTGATGAAGGTGGAGTCACTGTAATGTCTTCCTTACTTGGTCCTTTTACTTCCCATGCTGTCGGCTGCGAGGTCATTGGTATACTTGTATGTTTGACCCTTGATTCTGATTCGAAAAAGAATTTAATGCAACCTGCAAAACTTTCTTTAATGGTGGACATTTTGAACGAGGGTTCAATTGATACCAAAATCAATTGCACCCGACTGATTGAATCATTGATTGAGGAGAATGATTTTCGTTCTGAGATTGTTTCGAGCCATAGCCTCTTGGTTGGGCTGATGCGGCTTGTGAAGGATAAGAGACACTCAAACGGAATATTTCCTGGGCTTAGCCTCCTGGGAAAGTTATGCTTGCATAAAGAAGTTAGGAATTTGCTAGTGAGTATTGGGGCTGTTGCTCAGTTGGTTGAATTGTTATCTGCTTTGGAGCCAGAGTGTTCTGAGTTGGCGCTTTCCATTTTAGATGCACTGGCATCGATACCCGAAGGAAGAGTGGCGTTGAAGAAGTGTTCTAACACTATACCCAACATGGTGAATCACTTGATGAGAATCTCAGAGAACTGCACCCAATATGCATTGTCAGTCCTATGGTCTGTGTGCAAGCTTGCGCCTGAGGAATGCCCATCTGTTGCTTTGGATGCAGGGCTTGCTGCAAAGCTACTCCTTGTCATCCAAAGTGGTTGTAATCCTATATTGAAGCAACAGTCTGCTGAGCTTTTGAAATTGTGTAGTTTGAATTATTCAGATACTATCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCAATGA 1350 0.4637 MPMYQPSKRDVVAGFDGGGDGQILDLDTAVKDGVLGGVDGGIVGAGAGEKLDLGKMIQELDLSEVPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIYAWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHDVVAAHSTARKTVIDEGGVTVMSSLLGPFTSHAVGCEVIGILVCLTLDSDSKKNLMQPAKLSLMVDILNEGSIDTKINCTRLIESLIEENDFRSEIVSSHSLLVGLMRLVKDKRHSNGIFPGLSLLGKLCLHKEVRNLLVSIGAVAQLVELLSALEPECSELALSILDALASIPEGRVALKKCSNTIPNMVNHLMRISENCTQYALSVLWSVCKLAPEECPSVALDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00459 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Accr9g00459 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Accr9g00459 449 CDD RING-Ubox_PUB 66 116 IPR045210 -
Accr9g00459 449 Gene3D - 139 442 IPR011989 -
Accr9g00459 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Accr9g00459 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Accr9g00459 449 SUPERFAMILY ARM repeat 237 435 IPR016024 -
Accr9g00459 449 PANTHER WDSAM1 PROTEIN 61 435 IPR045185 GO:0061630
Accr9g00459 449 SUPERFAMILY RING/U-box 60 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00459 Accr-Chr9 4997814 4999163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00459 1 449 U-box Gene Family AT3G49810 73.719 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00459 - - gmx:100779827 741.495