Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00451 ATGGGTGCGCCAAAGCAAAAATGGACTGCTGAAGAAGAAGCGGCACTAAAAGCTGGAGTAATCAAACATGGGGCAGGAAAGTGGCGCACTATACTTACAGACCCAGAGTTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTAAAGGATAAATGGAGGAATATAAACGTGACTGCAATATGGGGATCCAGACAGAAGGCAAAACTTGCACTTAAAAAGAACCTACCGACCCCCAAAAATGATAACAACCATTTGGCATTGAGTACTGTTGTTCAACATGGTGAAGAAGTTCTTGATACTAAGCCTCTAGCAGTTGCTGGCAGACTGTCACAGCCTGCTACCCCAAAAGAACAAATACCTAGGTTGGATCATTTTATATTAGAGGCTATTGTCAATTTGAAGGAGCCAAAGGGTACTGACAGGGCTGCTATTGCTGCTTACATAGAGGAGCATCATTGTTCTCCACCAAACCTCAGAAAGTTGTTGTCAACAAAACTGAAGCATATGGTGGCCAGTGGCAAATTGACCAAGGTAAAACACAAGTACAGGATCACTCCAAGTTCTGCAATCTCTGAGAAAAGAAGACACTCTAACCTGTTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCGGAGAAGACCAATGTCAACATACTTTCAAAATCTCAGATTGACGCAGAGCTATCAAGAATGAAGGGCGTGACAGCCCAAGAAGCTGCTGCAGCTGCAGCAAAGGCAGTTGCTGAAGCAGAAGCGGCAATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCTGAAGCAGAGGCCGCACAAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAGAACACTGCAAATTTGA 885 0.452 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPTPKNDNNHLALSTVVQHGEEVLDTKPLAVAGRLSQPATPKEQIPRLDHFILEAIVNLKEPKGTDRAAIAAYIEEHHCSPPNLRKLLSTKLKHMVASGKLTKVKHKYRITPSSAISEKRRHSNLLLLEGRPKDSPKAEKTNVNILSKSQIDAELSRMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKCRTLQI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00451 294 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Accr9g00451 294 CDD H15 127 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr9g00451 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Accr9g00451 294 Coils Coil 242 279 - -
Accr9g00451 294 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Accr9g00451 294 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Accr9g00451 294 CDD SANT_TRF 6 57 - -
Accr9g00451 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Accr9g00451 294 Gene3D - 116 197 IPR036388 -
Accr9g00451 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr9g00451 294 Pfam linker histone H1 and H5 family 122 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr9g00451 294 FunFam Telomere repeat-binding factor 1 2 58 - -
Accr9g00451 294 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr9g00451 294 SMART sant 4 59 IPR001005 -
Accr9g00451 294 Gene3D - 2 59 - -
Accr9g00451 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00451 Accr-Chr9 4918115 4921509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00451 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 57.338 1.22e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr9g00451 Linker_histone 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00451 K09422 - gmx:778165 382.874