Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00401 ATGCCTCCCCAAGATATCGAGCACGAACAACGACTGTTAGTGGATTCTGACAAGCAAACAGCCGAAGCTGCCTACGATTCCTCCGAGAAAGTCGTAGTCGTCGGAATCGAAGAGTCCAACAATGACTTCGACGACGGTGATCGTGCCCCGCCGTTTTCATGGAAGAAGCTCTGGCTCTTCACGGGCCCTGGTTTTCTCATGAGCATTGCCTTTCTCGATCCTGGAAATCTTGAGGGAGATCTTCAGGCTGGTGCAATTGCTGGCTACTCCCTCTTATGGCTTCTCATGTGGGCCACAGCCATGGGGCTTTTGGTTCAGCTTTTGGCGGCACGGCTCGGAGTGGTGACTGGGAAGCATCTGGCCGAACTCTGCAGGGAGGAGTATCCAACTTGGGCGAGGATGGTACTGTGGGTTATGGCGGAGTTGGCTCTGATTGGGTCCGACATTCAAGAGGTTATTGGGAGCGCTATTGCTATCAGAATTCTAAGTAACGGGACTGTGCCCCTTTGGGCCGGGGTCGTCATCACAGCTTGTGATTGTTTTATTTTCCTGTTTCTTGAGAACTACGGTGTGAGGAAATTGGAAGCATTTTTCGCTGTTCTCATTGGTGTAATGGCCGTCTCATTTGCGTGGATGTTTGGTGAAACAAAGCCCAGTGGAAAAGATCTTCTTCTTGGTATTTTGGTTCCGAAACTAAGCTCCAGAACAATACAGAAGGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTATTCTTGCACTCTGCACTTGTTCAGTCAAGACAGGTTGAGCAGAACAAGAAAGGCAGAGTTCAGGAAGCACTTAATTATTATTCTATAGAGTCAACCGCTGCCCTTGTTGTCTCCTTTATCATTAATGTATTTGTCACGACAGTGTTTGCCAAGAGTTTTTATGGAACTGACCTTGCAAATAGTGTTGGTCTTGTGAATGCTGGGCAGTATCTTGAAGAGAAGTATGGAGGTGGACTTCTGCCAATCTTATATATATGGGCTATTGGGTTATTAGCAGCTGGTCAAAGTAGCACTATTACAGGGACTTATGCTGGACAGTTTATAATGGGGGGTTTTCTTAATTTAAGGTTGAAAAAATGGATGAGGTCATTAATTACACGGAGTTGTGCTATTATCCCAACCGTGACCGTTGCTCTTGTCTTTGAAACATCAGAGGACTCGTTAGATGTTCTAAATGAATGGCTTAATGTTCTCCAGTCAATTCAAATCCCCTTTGCACTCATTCCATTGCTTTTTTTGGTGTCCAAGGAGCACATAATGGGCGCTTTCAGAATTGGCCCTGTCCTCAAGATAATTGCATGGTTTGTGGCTGCTCTGGTGATAGCGATCAACGGGTATCTTATGCTAGAATTCTTCAACTCTGAGGTCAATGGAGTAATGCTTGGTGCTGTTTTGTGTGCTTTTGCGGCTGCATATGTTGCATTCATACTTTACCTTGTTTCAAGGGCCATCACCTTTTCACCTGGGCAAAGTTCAACACAATCAAAGACGATTACTAACTCAAATAATTAA 1551 0.4533 MPPQDIEHEQRLLVDSDKQTAEAAYDSSEKVVVVGIEESNNDFDDGDRAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLVQLLAARLGVVTGKHLAELCREEYPTWARMVLWVMAELALIGSDIQEVIGSAIAIRILSNGTVPLWAGVVITACDCFIFLFLENYGVRKLEAFFAVLIGVMAVSFAWMFGETKPSGKDLLLGILVPKLSSRTIQKAVGVVGCIIMPHNVFLHSALVQSRQVEQNKKGRVQEALNYYSIESTAALVVSFIINVFVTTVFAKSFYGTDLANSVGLVNAGQYLEEKYGGGLLPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRSLITRSCAIIPTVTVALVFETSEDSLDVLNEWLNVLQSIQIPFALIPLLFLVSKEHIMGAFRIGPVLKIIAWFVAALVIAINGYLMLEFFNSEVNGVMLGAVLCAFAAAYVAFILYLVSRAITFSPGQSSTQSKTITNSNN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00401 516 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 NCBIfam Nramp family divalent metal transporter 62 431 - -
Accr9g00401 516 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 48 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 Hamap Divalent metal cation transporter MntH [mntH]. 44 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Accr9g00401 516 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00401 Accr-Chr9 4426759 4429846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00401 3 509 Inorganic Solute Cotransporters AT2G23150 76.667 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00401 K21398 - qsa:O6P43_024584 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00401 9 4426759 4429846 Accr10g00179 10 3261004 3263617 CCT
Accr9g00401 9 4426759 4429846 Accr9g00401 9 4426759 4429846 ECH