Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00365 ATGAACATTCACTCTCTGTCCCTCCCTTTTGATCAGTCTCGCCGAGAGAGAGGGACGGACGGCGGCGAACCGGCGAAGAGAGAGATGCCGACCAGGAAAAGGGGGGCCGTTCAACTTGAAGGAGAAAGAAGATACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAGATTCGAGAGCCCAATAAACGCTCTAGGATTTGGCTCGGTTCCTACTCCACTCCGGTCGCCGCAGCCCGGGCCTACGACACCGCCGTTTTCTATCTCAGGGGCCCATCGGCTCGCCTTAATTTCCCTGACCTCTTAGAAGGCGGCGCCGTTGGCGGCTGCGACTGCGACATGTCGGCGGCTTCGATTAGGAAGAAAGCGACGGAGGTCGGTGCCAGAGTCGACGCGATTCAGGCCGCTCTCCACCATCACCACCATGCCTCGGTGGCGCCGGAGATGATCTCACGCAGTGCAGGCGCCGGAGCCGGCTCCGGGGAGTTTTTGGCGCGGGTTGATCTTAACAAGATACCAGAACCTGAGGATTCGGACTGCGACTGCGAGTGA 558 0.595 MNIHSLSLPFDQSRRERGTDGGEPAKREMPTRKRGAVQLEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLEGGAVGGCDCDMSAASIRKKATEVGARVDAIQAALHHHHHASVAPEMISRSAGAGAGSGEFLARVDLNKIPEPEDSDCDCE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00365 185 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Accr9g00365 185 MobiDBLite consensus disorder prediction 10 34 - -
Accr9g00365 185 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Accr9g00365 185 CDD AP2 44 103 IPR001471 GO:0003700|GO:0006355
Accr9g00365 185 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Accr9g00365 185 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Accr9g00365 185 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Accr9g00365 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 33 181 - -
Accr9g00365 185 MobiDBLite consensus disorder prediction 1 34 - -
Accr9g00365 185 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Accr9g00365 185 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Accr9g00365 185 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00365 Accr-Chr9 4086724 4087281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00365 20 185 AP2-EREBP Transcription Factor Family AT5G67190 55.026 1.27e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr9g00365 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00365 K09286 - gmx:100783682 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00365 9 4086724 4087281 Accr10g00146 10 2586134 2586604 CCT
Accr9g00365 9 4086724 4087281 Accr9g00365 9 4086724 4087281 ECH