Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00349 ATGGGGGATATTTATAGCTATGATGATACTGATGATCATGATTTCCTTGCGTCTTCAACCTCATCTTCACCTCAAGACGAGATCTCGCTTTTCCTGCGCCAGATTCTCCTTCGTTCATCCTCCTCCTCGTCAGCTTCATCGTCGCTGCTTGTGACCGACACGGTGAAAAACGCCCACACCTCGACGGCTGGACTCTGCAGTTCCCACGCCACGCTGGAGAATGCTCACGCTTCTGACCGATCATCACTTTTCCGAGACGGGATCTCCCTCGTCGCTGATTCCTCTGTTGGAGTAGGCGATCCTAACAATGGTTTTCTTTCCTCCTCGGGGACTTGTACGTTGGCCAATATGAAGGGTGGTTCTGCTGTAAACATGCCTTCGTCTTATTTTGGAGTAAGTGAGAATGAGTTCGATGAGTACGATTGCGAGAGTGAGGAGGGGATCGAAGCATTGGTGGAACAGCAGCCGGTGAGGTCAGTTCCTCCGAGGAGTTCATCAAAGAGAAGCAGAGCTGCTGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAATCTGATTCCAAATTCAAACAAGACAGACAAGGCTTCGATGCTGGATGAAGCAATTGAATACCTCAAACAACTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCGTGCTATGTGCTTTTCAGAAGACTTGCAGGCTCAGCAATTTTGTCAGATGATATCTGAGCTCAATGAAGAAAACAGTTCTTTGCCTTCACACATGGAAACTACTCTGCCTTTGACCCAAGAGACCCCGTTGCAATATGAGTCCAAATCCAGTCTACCTGACAAACCCAATTCACAGGACCAACCATTAGTGCCCTCTCCATCATATACAATCAACCCAGAAACTTCTTTTGTTCTAGATTCCCCAATTCTGCCACATATAAGATTTCTTCCACAGAAAGGAACTGAGCAGATGCGTAGCAATGAGATATTGCGGCGCCAGCAATCAAATGCGAGCCATTCAGATACCAATCCTTTAGGTGGTTCTCAAGTATCCCACACCTTTGATATGCAAACATCCGAGCAGAAGGGCAAGGGCTTTGAAACTGGCTTTGTGGGAAAAGATCAATTGGCATCGATCTTAAGAAATAGCGTAAGCAACGTTAATATTACGTCACGGTTTCGGAGATTACAGGCGGGAGAAAGTATATGCGAAGACGACATCAAGACAGAAAAACCTAGTTTGTGA 1269 0.4578 MGDIYSYDDTDDHDFLASSTSSSPQDEISLFLRQILLRSSSSSSASSSLLVTDTVKNAHTSTAGLCSSHATLENAHASDRSSLFRDGISLVADSSVGVGDPNNGFLSSSGTCTLANMKGGSAVNMPSSYFGVSENEFDEYDCESEEGIEALVEQQPVRSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLRAMCFSEDLQAQQFCQMISELNEENSSLPSHMETTLPLTQETPLQYESKSSLPDKPNSQDQPLVPSPSYTINPETSFVLDSPILPHIRFLPQKGTEQMRSNEILRRQQSNASHSDTNPLGGSQVSHTFDMQTSEQKGKGFETGFVGKDQLASILRNSVSNVNITSRFRRLQAGESICEDDIKTEKPSL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00349 422 Gene3D - 165 229 IPR036638 GO:0046983
Accr9g00349 422 MobiDBLite consensus disorder prediction 279 303 - -
Accr9g00349 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Accr9g00349 422 MobiDBLite consensus disorder prediction 168 182 - -
Accr9g00349 422 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 342 IPR031066 -
Accr9g00349 422 Pfam Helix-loop-helix DNA-binding domain 174 220 IPR011598 GO:0046983
Accr9g00349 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 230 IPR036638 GO:0046983
Accr9g00349 422 FunFam Basic helix-loop-helix transcription factor 165 228 - -
Accr9g00349 422 SMART finulus 176 225 IPR011598 GO:0046983
Accr9g00349 422 MobiDBLite consensus disorder prediction 154 182 - -
Accr9g00349 422 CDD bHLH_AtPIF_like 170 232 IPR047265 -
Accr9g00349 422 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00349 Accr-Chr9 3903020 3905646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00349 7 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 48.536 1.83e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr9g00349 HLH 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00349 - - pcin:129321987 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00349 9 3903020 3905646 Accr9g00349 9 3903020 3905646 ECH