Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00348 ATGGGGGATATTTATAGCTATGATGATACTGATGATCATGATTTCCTTGCGTCTTCAACCTCATCTTCACCTCAAGACGAGATCTCGCTTTTCCTGCGCCAGATTCTCCTTCGTTCATCCTCCTCCTCGTCAGCTTCATCGTCGCTGCTTGTGACCGACACGGTGAAAAACGCCCACACCTCGACGGCTGGACTCTGCAGTTCCCACGCCACGCTGGAGAATGCTCACGCTTCTGACCGATCATCACTTTTCCGAGACGGGATCTCCCTCGTCGCTGATTCCTCTGTTGGAGTAGGCGATCCTAACAATGGTTTTCTTTCCTCCTCGGGGACTTGTACGTTGGCCAATATGAAGGGTGGTTCTGCTGTAAACATGCCTTCGTCTTATTTTGGAGTAAGTGAGAATGAGTTCGATGAGTACGATTGCGAGAGTGAGGAGGGGATCGAAGCATTGGTGGAACAGCAGCCGGTGAGGTCAGTTCCTCCGAGGAGTTCATCAAAGAGAAGCAGAGCTGCTGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAATCTGATTCCAAATTCAAACAAGACAGACAAGGCTTCGATGCTGGATGAAGCAATTGAATACCTCAAACAACTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCGTGCTATGTGCTTTTCAGAAGACTTGCAGGCTCAGCAATTTTGTCAGATGATATCTGAGCTCAATGAAGAAAACAGTTCTTTGCCTTCACACATGGAAACTACTCTGCCTTTGACCCAAGAGACCCCGTTGCAATATGAGTCCAAATCCAGTCTACCTGACAAACCCAATTCACAGGACCAACCATTAGTGCCCTCTCCATCATATACAATCAACCCAGAAACTTCTTTTGTTCTAGATTCCCCAATTCTGCCACATATAAGATTTCTTCCACAGAAAGGAACTGAGATGCGTAGCAATGAGATATTGCGGCGCCAGCAATCAAATGCGAGCCATTCAGATACCAATCCTTTAGGTGGTTCTCAAGTATCCCACACCTTTGATATGCAAACATCCGAGCAGAAGGGCAAGGGCTTTGAAACTGGCTTTGTGGGAAAAGATCAATTGGCATCGATCTTAAGAAATAGCGTAAGCAACGTTAATATTACGTCACGGTTTCGGAGATTACAGGCGGGAGAAAGTATATGCGAAGACGACATCAAGACAGAAAAACCTAGTTTGTGA 1266 0.4573 MGDIYSYDDTDDHDFLASSTSSSPQDEISLFLRQILLRSSSSSSASSSLLVTDTVKNAHTSTAGLCSSHATLENAHASDRSSLFRDGISLVADSSVGVGDPNNGFLSSSGTCTLANMKGGSAVNMPSSYFGVSENEFDEYDCESEEGIEALVEQQPVRSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLRAMCFSEDLQAQQFCQMISELNEENSSLPSHMETTLPLTQETPLQYESKSSLPDKPNSQDQPLVPSPSYTINPETSFVLDSPILPHIRFLPQKGTEMRSNEILRRQQSNASHSDTNPLGGSQVSHTFDMQTSEQKGKGFETGFVGKDQLASILRNSVSNVNITSRFRRLQAGESICEDDIKTEKPSL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00348 421 Gene3D - 165 229 IPR036638 GO:0046983
Accr9g00348 421 MobiDBLite consensus disorder prediction 279 303 - -
Accr9g00348 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Accr9g00348 421 MobiDBLite consensus disorder prediction 168 182 - -
Accr9g00348 421 Pfam Helix-loop-helix DNA-binding domain 174 220 IPR011598 GO:0046983
Accr9g00348 421 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 338 IPR031066 -
Accr9g00348 421 FunFam Basic helix-loop-helix transcription factor 165 228 - -
Accr9g00348 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 230 IPR036638 GO:0046983
Accr9g00348 421 SMART finulus 176 225 IPR011598 GO:0046983
Accr9g00348 421 MobiDBLite consensus disorder prediction 154 182 - -
Accr9g00348 421 CDD bHLH_AtPIF_like 170 232 IPR047265 -
Accr9g00348 421 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00348 Accr-Chr9 3903020 3905646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00348 7 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 49.372 1.72e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr9g00348 HLH 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00348 - - pcin:129321987 510.76