Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00347 ATGGCCGATGAACAGCCTTCAACGACTTCCAAACGAAGGGGAAGAGGAGCTGAGGCATCGGCGCGTTCCGAAGCTTTGGAACGTCTAAAAGCTCGTCTTCGTGGCGGTCGCCGTTCAGATGGCGATGGATATCAAATTAAGTTAGACAACCCTGTTTATGACACTATCGAAGAGGACGAGTACACTGCTCTCGTCGCCAAGCGCCGTGAAGAAGCCCGCGGCTTCATTGTGGACGATGACGGCCTTGGGTACGGGGACGAAGGAGAGGAGGAGGATTGGTCAAAAGCTGGGTTCACCCTGTCCTCCGACGAATCCGATGGCGAAACAGAAAAGCCCAAAAGGAAGAGACAGGAAAAGAAAGATCCTCAACCTAAAAGGCCACCGTCTTCCCTATCGGCTGCGGCAGCGATGATAGGGGCGCAGAGGTTGTCATCGATGTTCACTTCGTCAGTTTTTAAGAAAACCCGGGATGATAAGGCTACAGGATTTTCCTGTGATAGCATTGTTGATGATGTTATCGCAGAGTTTGCCCCGGATGAGACCGATAGACTAAGGCGCAGACGCGGGCCAACAGATCCTTCATCAAGGGCGAACATTGCTCTGCCGATTAATAATGTCAAGAGCGAGGAACCAGCGATTGGATGTCTTCATCCGATGGGAAGTCCTTTGTCCTCGGATGCTGCCGCAAATGGCAGTTATGAATCTACCGGAGTTGCGAAAAATGATGGTTATGCCTTGGTTTCTGAACGAAACTACGGAGGAGTCAAAGTAGAGGCAACTACTAAAGAGTCAGAAGATGGGAGAAATATTAATCCCGACGATGGTCTGGCATCAATCTTGCAAACTCATAGTGGTCCAACTAACGGAGACGTGACTGAAGAGAAAATGTCAAAGGCCGTTGAGATGAAAGCTAAAAAGACAGTGGAGAAGGAGGTATTTCCTCTTAATGCGAAAGTTAAAGAAGACGACCCTACACTGAGTGCAACTATCGGTTGGCAGGCAGCAAAGAGCGGGGGCGACGTCAATGTTGCTGATTCAAAGGTGGCGGACGAAGCTTTAAATGGTGAAGAAAACTTAGAGTTCAATCTGGAGGCTGATGGGTCGCTGCCTTTCTACATACTTGATGCCCATGAGGAATTCTATGGAGCTAACATGGGTACCCTTTATTTGTTTGGGAAGGTCAAATCAGGTAATTCGTACCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCGATTCCAAGTCGTCCTTTACATCACACTGATGAGATGATGGAACTTGAGAAGGATGTTGAAGAGTCCCGGATTTCTCGTACAGACTTTCATAAAAAGCTGCAAGATATGGTGTCTGGTTTAAAGAATGAGATAGCAAAACAGCTGTTAGATCTGAACGCTTCAACTTTTAGTATGAAACCTGTTAAGAGGAAATATGCATATGAACGCTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATCAACTATCCATTCAAGGATCCACCTCTTCCAGTAGATCTGAAAGGAGAGAGTTTCTGTGCTGTTCTAGGAACTCATTGCAGCGCGTTGGAGCTTTTTCTAATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACTACTTTCAAACTTTTCTGCCCGCCTTACTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAAGACATGAGGATTTCAACTTCCTCCAAATCCAGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAACAAAACTTAAACGAGATTGTCTCTGCATCCCTTGTTTGCTGCCGCAGGGTCAAGATTGACACTCCCATGCTGGCTTCAGAATGGAAGAGACCTGGACTACTGACCCATTTTACTGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTCAATAAGGAAGTTACAGACCGAAACACAAAAGCTGGATCAAATGTTCTATGTGTTGAGAGCAGTGAAAGGGCTTTACTAAACCGCCTGATGATAGAATTACACAAGTTGGACAGTGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCCAAAGTGCCAAGCAGCATGTGGTCCAAAACAGGTCGCCTTAAACGATCTGTGATGCCTAAACTTACCAGAGTAAGCACTGTTTTTGGTTCTGGAGCTACTCCTGGTATCATGTCTTGTATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTATTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAATCTCAGCTGAATAAAGTTCGAAAGGAAGTTGCTCCACATGATGTTCCAAAAATGTTCCAATCAGCAGAATCCCTTATGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAGCTGACTAATATTAGTGGTAATTTGTGGGGAAAAACACTTCAGGGTGCAAGGGCACAGAGAGTGGAGTATCTTCTGTTGCATGCTTTCCATGCAAAGAAATATATGGTGCCAGACAAGATTCCTGCCCATGCCAAAGAAACAAAATTGACGAAACGCAGAGGAACTCATGGTGTTGAGGATGTCAGCTTTGACGAAGTTATTGACAATGCAAACTATGACAATGATGCTTCTGACAATGATCATGGTAAAAGCAAGAAGACCCCGTCCTATGCTGGAGGGCTGGTCTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTCTTGGACTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGGATCTTTCCCTCGTCTGCCATCTAGTAAAACAACTGGAGTTTTGCCAGAGCTGCTGAAAAATTTGGTTCAAAGGAGGAGAATGGTGAAGTCATGGATGAAAACTGCTTCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAACAAGCACTCAAGCTTACTGCAAACAGTATGTACGGATGCCTGGGATTTGCTAATTCAAGATTTTATGCAAAACCGTTGGCCGAGCTTATAACCTTGCAAGGAAGGGAGATATTACAAAGTACTGTTGATCTGGTTCAGAATAACTTGAACTTGGAGGTGATCTATGGCGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAAGCAAAAGCAATGGCCGGAAAAGTGATTCAAGAGGTCAACAAGAAATATAGGTGCTTGGAAATTGACCTTGATGGTTTGTACAAGAGAATGCTACTGCTGAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCTCGCCATATGAGGTTATTGAACGTAAGGGTCTGGACATTGTTCGTCGTGACTGGAGTCTATTATCTAAAGAAATAGGAGATTTTTGCCTAGGCCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTCGTAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCATGTTCTTGTGGCACAAAGGTTGAAGCAAAAGGGCTACTCCACTGGTTGCTCTGTTGGTGATGCAATCCCCTACATTATTTGCTATGAGCAGGGCAGTAATACAAGCAGCGGAACAAGTATTGCTCAACGTGCTAGACATCCTGAGGAACTAAAACAAGAACAAGGGAAATGGATGATTGACATTGATTATTACCTATCACAACAGCTTCATCCTGTTGTATCACGTCTCTGTGCATCAATTCAGGGCACGAGTCCAGAAAGGCTGGCTGATTGTTTAGGGCTTGATGCATCAAAATTTCAACACAAGTCAAGTGAAGCCTTCAATGGTGATCCTTCAAATTCACTCTTGTTTGCTGCTGATAACAAAGAGAGGTATCAAGGATGTGAGCCGTTGGTTTTTTCTTGTCCTAGCTGCTCTGTTACTTTTGACTGCCCTCCCATATTTAAATCTTTTTGTGAAAGTGAAAAGGCAACAAGCTCAGGCATGGAGGAATCAAGTTATAATTTCTGGCGTAAGCTGCGCTGTCCTAAGTGCCCGGAAGATGGTGTTGGCAGAATTTCTCCTGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGATAAGTTTATTTCAATGTACTACAGAGGCTTGTTAATGTGTGACGATGAAACTTGTAAGTATTCAACGCGAAGTATCAACCTTCGGCTGGTTGGTGATTCTGAAAGAGGAACTGTGTGTCCAAACTACCCTCGCTGCAATGGGCGTCTTCTAAGACAGTACACGGAGGCAGACTTGTATAAACAGCTCTCGTATTTTTGCCATGTGTTTGATACTGTTTCCTGTATAGAAAAGATGGAGGTTAAATCTAGGATGCCACTTGAGAAAGAGTTGTCGAAAATTAGGCCAATGGTTGATCTGGCAGCAGCAACGATACAGAAGATTCGGGATCGGTGTGCCTTTGGGTGGGTACAGATGCAGGACTTGGTCATCACTGTATGA 4656 0.4379 MADEQPSTTSKRRGRGAEASARSEALERLKARLRGGRRSDGDGYQIKLDNPVYDTIEEDEYTALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGETEKPKRKRQEKKDPQPKRPPSSLSAAAAMIGAQRLSSMFTSSVFKKTRDDKATGFSCDSIVDDVIAEFAPDETDRLRRRRGPTDPSSRANIALPINNVKSEEPAIGCLHPMGSPLSSDAAANGSYESTGVAKNDGYALVSERNYGGVKVEATTKESEDGRNINPDDGLASILQTHSGPTNGDVTEEKMSKAVEMKAKKTVEKEVFPLNAKVKEDDPTLSATIGWQAAKSGGDVNVADSKVADEALNGEENLEFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKSGNSYQSCCVVVKNMQRCVYAIPSRPLHHTDEMMELEKDVEESRISRTDFHKKLQDMVSGLKNEIAKQLLDLNASTFSMKPVKRKYAYERSEIPAGENYVLKINYPFKDPPLPVDLKGESFCAVLGTHCSALELFLIKRKIKGPSWLLLSNFSARLTSQRVSWCKFEVTVDSPKDMRISTSSKSSFEIPPVVVTAINLKTIINEKQNLNEIVSASLVCCRRVKIDTPMLASEWKRPGLLTHFTVVRKLDGGIFPLGFNKEVTDRNTKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKTGRLKRSVMPKLTRVSTVFGSGATPGIMSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKSQLNKVRKEVAPHDVPKMFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYMVPDKIPAHAKETKLTKRRGTHGVEDVSFDEVIDNANYDNDASDNDHGKSKKTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTTGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGSPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLRKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDAIPYIICYEQGSNTSSGTSIAQRARHPEELKQEQGKWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKFQHKSSEAFNGDPSNSLLFAADNKERYQGCEPLVFSCPSCSVTFDCPPIFKSFCESEKATSSGMEESSYNFWRKLRCPKCPEDGVGRISPAMIANQVKRQADKFISMYYRGLLMCDDETCKYSTRSINLRLVGDSERGTVCPNYPRCNGRLLRQYTEADLYKQLSYFCHVFDTVSCIEKMEVKSRMPLEKELSKIRPMVDLAAATIQKIRDRCAFGWVQMQDLVITV 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00347 1551 SUPERFAMILY Ribonuclease H-like 366 872 IPR012337 -
Accr9g00347 1551 Coils Coil 1099 1119 - -
Accr9g00347 1551 ProSitePatterns DNA polymerase family B signature. 1073 1081 IPR017964 GO:0000166|GO:0003676
Accr9g00347 1551 CDD DNA_polB_alpha_exo 584 835 - -
Accr9g00347 1551 FunFam DNA polymerase 1344 1537 - -
Accr9g00347 1551 FunFam DNA polymerase 983 1032 - -
Accr9g00347 1551 FunFam DNA polymerase 584 898 - -
Accr9g00347 1551 Gene3D - 411 537 - -
Accr9g00347 1551 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1549 - -
Accr9g00347 1551 Pfam DNA polymerase family B, exonuclease domain 400 778 IPR006133 -
Accr9g00347 1551 SUPERFAMILY DNA/RNA polymerases 868 1320 IPR043502 -
Accr9g00347 1551 MobiDBLite consensus disorder prediction 1 24 - -
Accr9g00347 1551 MobiDBLite consensus disorder prediction 76 132 - -
Accr9g00347 1551 CDD POLBc_alpha 918 1321 IPR045846 GO:0003887|GO:1902975
Accr9g00347 1551 Gene3D Palm domain of DNA polymerase 911 1135 IPR023211 -
Accr9g00347 1551 Gene3D DNA Polymerase alpha, zinc finger 1345 1536 IPR038256 -
Accr9g00347 1551 Gene3D Helix hairpin bin 981 1032 - -
Accr9g00347 1551 FunFam DNA polymerase 411 537 - -
Accr9g00347 1551 Gene3D - 584 895 IPR036397 GO:0003676
Accr9g00347 1551 FunFam DNA polymerase 1149 1335 - -
Accr9g00347 1551 Pfam DNA polymerase family B 843 1305 IPR006134 GO:0000166|GO:0003677
Accr9g00347 1551 NCBIfam DNA polymerase (pol2) 52 1303 - -
Accr9g00347 1551 SMART polmehr3 584 1085 IPR006172 GO:0000166|GO:0003676|GO:0003887
Accr9g00347 1551 PRINTS DNA-directed DNA-polymerase family B signature 942 955 IPR006172 GO:0000166|GO:0003676|GO:0003887
Accr9g00347 1551 PRINTS DNA-directed DNA-polymerase family B signature 1018 1030 IPR006172 GO:0000166|GO:0003676|GO:0003887
Accr9g00347 1551 PRINTS DNA-directed DNA-polymerase family B signature 1071 1079 IPR006172 GO:0000166|GO:0003676|GO:0003887
Accr9g00347 1551 Pfam DNA Polymerase alpha zinc finger 1346 1547 IPR015088 GO:0003887|GO:0006260
Accr9g00347 1551 Gene3D - 1149 1334 IPR042087 -
Accr9g00347 1551 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Accr9g00347 1551 MobiDBLite consensus disorder prediction 31 50 - -
Accr9g00347 1551 Gene3D - 371 570 - -
Accr9g00347 1551 MobiDBLite consensus disorder prediction 104 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00347 Accr-Chr9 3890238 3901606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00347 1 1549 Core DNA Replication Machinery Family AT5G67100 60.778 0.0 1870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00347 K02320 - zju:107424534 2272.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00347 9 3890238 3901606 Accr9g00347 9 3890238 3901606 ECH