Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00342 ATGTCTCTCTTGGACGTCGACATGAACAAATCTTCAGGGTGTGAAGGCAGTGGCATGGACATGATCTCCATGATGATGCAAATGGAGAAGTTTTCTGCTGATCAGTTCTGTGATCCTTTCTTTAACAATCCCACTGATTGCCCTGAAGCTACTGAATCTGCTAATATTGCTGCCACTTTCCTTGACCCTAACGAGGCTCCTGATTTTGTCAACACTAGTCCAATTATTCAACAACCCATGGCACCACCGCCATCATTTCTTCATCATCAACCTCAGTCGCCGGACGATGTTCCTCCGACGAGACCCAGGAATAAATATAATCCGAACAACACGTCATACACTAACTACGCGTGTCGTTCAGAGAAGAGGAATTCAATGGCGGCGATGAGAGAGATGATATTCAGGATAGCGGTGATGCAGCCGATTAATATAGACCCAGAATCCGTGAAGCCACCGAAGAGGAAGAACGTGAAGATATCGAAGGACCCACAGAGCGTGGCGGCGAGGCACAGGAGAGAGAGAATAAGCGAGAGGATAAGGATTTTGCAGAGATTAGTGCCGGGAGGGACGAAAATGGACACGGCTTCTATGTTGGAGGAAGCCATACATTACGTCAAGTTCTTAAAGAAACAAGTGCAGACTCTGGAACAGGCAGGGGCTAGTAGTACTAGTAGGGCCATTGGTGTTCCTTTTTCTGGCACCCCATCAAGTACTGTCAATGTCAATTATTCTGATTTCATGGTTAAGGGTCGCCAATTACCGGCAGCTCCTCCAATGGTGGGTTCTATGCACATGCTATGA 801 0.4707 MSLLDVDMNKSSGCEGSGMDMISMMMQMEKFSADQFCDPFFNNPTDCPEATESANIAATFLDPNEAPDFVNTSPIIQQPMAPPPSFLHHQPQSPDDVPPTRPRNKYNPNNTSYTNYACRSEKRNSMAAMREMIFRIAVMQPINIDPESVKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLEEAIHYVKFLKKQVQTLEQAGASSTSRAIGVPFSGTPSSTVNVNYSDFMVKGRQLPAAPPMVGSMHML 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00342 266 Gene3D - 158 226 IPR036638 GO:0046983
Accr9g00342 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Accr9g00342 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 218 IPR036638 GO:0046983
Accr9g00342 266 CDD bHLH_AtIND_like 160 216 - -
Accr9g00342 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 235 IPR045843 GO:0003700|GO:0006355
Accr9g00342 266 SMART finulus 165 214 IPR011598 GO:0046983
Accr9g00342 266 MobiDBLite consensus disorder prediction 73 115 - -
Accr9g00342 266 Coils Coil 198 218 - -
Accr9g00342 266 FunFam BHLH transcription factor 162 226 - -
Accr9g00342 266 MobiDBLite consensus disorder prediction 145 171 - -
Accr9g00342 266 MobiDBLite consensus disorder prediction 148 171 - -
Accr9g00342 266 Pfam Helix-loop-helix DNA-binding domain 169 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00342 Accr-Chr9 3841282 3842082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00342 125 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 84.259 3.26e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr9g00342 HLH 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00342 - - qsa:O6P43_033826 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00342 9 3841282 3842082 Accr9g00342 9 3841282 3842082 ECH