Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00333 ATGTCATCGCAGAGATCGGTACCGGCGCCGTTTCTGACGAAGACGTACCAGTTGGTGGATGATCCGGCCACCGACGACGTCATATCGTGGGGTGAGAGTGGGAACACGTTCGTGGTGTGGAAGCATGCGGATTTTGCCAAGGATTTGCTTCCCACCTATTTCAAGCACAACAACTTCTCAAGCTTCGTCCGCCAGCTCAATACCTATGGATTCCGGAAGATTGTTCCTGACAAATGGGAATTTGCGAACGAATATTTCAAGCGAGGACAGAAGGAGCTGTTGGCGGAGATTAAACGTCGGAAGCCCGTGGTGCAATCGGCGGCGCAGGCGCCTGCAGCGTCGAACTCTGGCGGGGACGACATGGGATCTTCCTCCACTTCGAATCTGGGAACAGTAGAGACGACGAGTTCTCAAGTGGCGAATTTATCGGGAGAGAACGAGAAATTGAAGAAGGATAACGAGATGCTGAACTGGGAGCTGGCGCAAGCGAAGAAGCAGTGCGAGGAGCTGATAAGTTTTCTGAAGGAGCAAGTGAAGATGGGTCCGGACCAGATCCATCGGATCATGCGGCAAGGAAGTTGTGGGTCCAGCCGTAAACACGGAGGCGAAGATGACGACGAAAAGGCGGTAGGTGAAGGGGAGGTGTCTGGTGGGGAAAGCCTGAAGCTCTTTGGAGTTAGGTTGAACATAAGCCATGGCACCACCTCCACCGCCAAGAGAGGGCTCGAAGACCAAATCGGGTGTGGTGGTCCTCACTCTAACAAGCAGTTGAAAACTGTTGACTTTGTTTCACCTGTGATGATGAAGAGCAGCAAGGTCTGCAACTGA 828 0.529 MSSQRSVPAPFLTKTYQLVDDPATDDVISWGESGNTFVVWKHADFAKDLLPTYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLAEIKRRKPVVQSAAQAPAASNSGGDDMGSSSTSNLGTVETTSSQVANLSGENEKLKKDNEMLNWELAQAKKQCEELISFLKEQVKMGPDQIHRIMRQGSCGSSRKHGGEDDDEKAVGEGEVSGGESLKLFGVRLNISHGTTSTAKRGLEDQIGCGGPHSNKQLKTVDFVSPVMMKSSKVCN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00333 275 Coils Coil 132 166 - -
Accr9g00333 275 Gene3D - 3 101 IPR036388 -
Accr9g00333 275 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr9g00333 275 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 199 IPR027725 -
Accr9g00333 275 MobiDBLite consensus disorder prediction 108 140 - -
Accr9g00333 275 MobiDBLite consensus disorder prediction 197 213 - -
Accr9g00333 275 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr9g00333 275 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr9g00333 275 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr9g00333 275 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr9g00333 275 MobiDBLite consensus disorder prediction 192 213 - -
Accr9g00333 275 FunFam Heat stress transcription factor B-4 3 101 - -
Accr9g00333 275 SUPERFAMILY "Winged helix" DNA-binding domain 8 100 IPR036390 -
Accr9g00333 275 MobiDBLite consensus disorder prediction 104 140 - -
Accr9g00333 275 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00333 Accr-Chr9 3752354 3754436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00333 2 275 HSF AT4G36990 51.195 3.07e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr9g00333 HSF_DNA-bind 4.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00333 K09419 - vvi:100247320 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00333 9 3752354 3754436 Accr10g00119 10 2246139 2248280 CCT
Accr9g00333 9 3752354 3754436 Accr9g00333 9 3752354 3754436 ECH