Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00328 ATGGTGGCGGGTCATGGAAAGAACCGAGGGTTAGATGATCGGTCGGGAAATAAGAAGGAGGCGGTGGACCAACCCCGTGCCTCTACGGCTGCCGGAAAATCCGCTACTCCTCCTCGGCACGGTAAAAATACAGATTACGATGATGACTTAACCCTGGCCAACTGGTCAAAGTCTCCCAAACGCTCCCCTCCTACAACAACGCCCAAACGGAACAAGATGGTACAGAATCAACGCAGGCTCTTGAACATTCAGAAAAAACATTTGGATTCTCCAACTAATCAAGGTTTATCCGATCAGGCACAAAAGCTTGCAAGCTCCTCTAAGGTGGCAATAGATAGGACATTATCAGGAGAGGCCAGGTCGTCTGCTGTGTTTCGAGCAGAGGTGGTCCAATCAAAGTTAGATCTCAGATTGCCTAGCTTTGTGAAGTCATTGGTTAGATCACATGTTGCTGGTGTTTTTTGGATGGGGCTCCCACCGTTTTTCTGTAAAAGATTCTTACCGGATATTGACACTACGATTACTTTGGAAGACGAATCTGGTAAAGAATACCAGTTAAAATACATTGCTTGCAAGACAGGTTTAGGCGCTGGTTGGAGGCAGTTTTCTGCTGTCCACAAATTGCAGGACGGAGATGTTTTGGTCTTCCAATTAGTTGAACCTTGTAAATTTAAGGTATATATAATAAGAGCAAATGGCTTGAGCGAACTGGATGGGGCGAATCTGGATGATTATACCAAGCAAAAAGCAAGAGATAATGCAAATAAGGATTCTCTGCCGAGTAATATCCCTAAGAGGAAGCAAGAAAAATCTAACCCACCATCTCCAGTTATCCAAAAGAAAAATAGGACAAGTGTGTCAAAGATTTCCCCCAAGGTTAGGCAATGTGCAGAACAGTGTGAATATGAAAGTGATGAAGCTGGTTCAGAAGTACTGGAGGGCCTTGGCATGGAGCTCAAATTCAAGGATGTAAAAGGTTTCGAAAATTTCAGTATCATAATTGATGGAATTCCAATAGATTCTGAGCTGCCCCAGGAGGTTCGAAATAAGTATTACAAGCTGTGCCATAGCCAGCAGGCCTTTCTACACGAGAATCTTATAAAGGGCATCAACCATAACCTCATTGTGGGCATTATATCTGAAGTTGTCAACATTGCTGATGCCTTGAGATCCAGCTCAGTACGAATCTCAGCCGCTGAATTTGTTAAATGGGATAAGGAGTTGCTGGCATTTGAGTATTTGGGGATGAATATGGAATTTTTAAGACACCGTTTAGTTAGGTTTCTAAACTTGGCATATGAAACACTAGATGCATATGAAACACAGGATGCCTCTGAGACTTCAAGGTATTCAACGTCCCCATCTGAGTTCAGTCGAGCAGATAACGAAATAATGAATATTGAAACAAAGCTTGGAGAATTGAAAGAAGCTTGTGATGGTTTTGGTGCTTATATTGAGAGTTTGAAGTACAAAGCTGAGCGCTTCCATAATCTCTAG 1497 0.4282 MVAGHGKNRGLDDRSGNKKEAVDQPRASTAAGKSATPPRHGKNTDYDDDLTLANWSKSPKRSPPTTTPKRNKMVQNQRRLLNIQKKHLDSPTNQGLSDQAQKLASSSKVAIDRTLSGEARSSAVFRAEVVQSKLDLRLPSFVKSLVRSHVAGVFWMGLPPFFCKRFLPDIDTTITLEDESGKEYQLKYIACKTGLGAGWRQFSAVHKLQDGDVLVFQLVEPCKFKVYIIRANGLSELDGANLDDYTKQKARDNANKDSLPSNIPKRKQEKSNPPSPVIQKKNRTSVSKISPKVRQCAEQCEYESDEAGSEVLEGLGMELKFKDVKGFENFSIIIDGIPIDSELPQEVRNKYYKLCHSQQAFLHENLIKGINHNLIVGIISEVVNIADALRSSSVRISAAEFVKWDKELLAFEYLGMNMEFLRHRLVRFLNLAYETLDAYETQDASETSRYSTSPSEFSRADNEIMNIETKLGELKEACDGFGAYIESLKYKAERFHNL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00328 498 MobiDBLite consensus disorder prediction 49 75 - -
Accr9g00328 498 Pfam B3 DNA binding domain 141 231 IPR003340 GO:0003677
Accr9g00328 498 Gene3D - 117 233 IPR015300 -
Accr9g00328 498 MobiDBLite consensus disorder prediction 255 290 - -
Accr9g00328 498 MobiDBLite consensus disorder prediction 249 290 - -
Accr9g00328 498 Coils Coil 457 477 - -
Accr9g00328 498 SMART B3_2 141 232 IPR003340 GO:0003677
Accr9g00328 498 MobiDBLite consensus disorder prediction 7 21 - -
Accr9g00328 498 MobiDBLite consensus disorder prediction 1 75 - -
Accr9g00328 498 CDD B3_DNA 139 230 IPR003340 GO:0003677
Accr9g00328 498 SUPERFAMILY DNA-binding pseudobarrel domain 135 233 IPR015300 -
Accr9g00328 498 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 233 IPR044837 -
Accr9g00328 498 ProSiteProfiles B3 DNA-binding domain profile. 141 232 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00328 Accr-Chr9 3729243 3732657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00328 116 256 B3 DNA Binding Superfamily AT3G19184 47.260 9.74e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr9g00328 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00328 - - vra:106768002 478.018