Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00257 ATGGCCTCTCAAAGCTTCAATTCGACGCTGTGTCACTTTGTTTTTGCTGTTGCGATAATCCTTAACATTTTTGCTCCAGCCCTTGGTTCTGACCAGACGAGTGGTTTAAGCATGAACGTGATTGATAAGTGTTGGAGAATGAACTCTGAGTGGCGGAGGCACCGCCCACAACTTGCAACTTGCTCTGTGGGTTACGCCGGAAAGATGACCGACAACATTGGCAAAGACCTCGTCCACTACAAAGTCACTGACCCTAGTGACGACCCAATAAACCCTAAACCAGGTACATTAAGATATGGAGCTTCCATAATTCAAAGCAGAGTGTGGATCACATTCCAAAGAGACATGCATATTAAGCTTCTCAAGCCCCTTCTCGTCAGCAGCTTCACCGCCATCGATGGCCGAGGCATCAATGTTCATATTTCTCATAATGCATGCTTGATGATCTACAAGTCGACCAACATTATAATACATGGCATTCGGATTCATCACTGTAAGGCTCAACCTGCAGGGATGGTGATGGGCCCAGAAGGGAAGGTAATTCAAGTAGGTCAGGTGGATGGGGATGCGATCAGATTGGTTTCAGCCTCCAACGTATGGATTGACCATAATACGTTGTATGATTGTCAAGATGGACTCCTGGATGTTACGAGGGGTTCCACCAACGTGACCATCTCTAACAATTGGTTTAGAAACCAAGACAAGGTTATGCTTCTCGGACACGACGATGGTTACGACAGGGACAAGAACATGAAGGTCACCGTGGTGTACAACCATTTTGGACCTAACTGCAACCAACGCATGCCTAGAATACGATTTGGGTATGCACATGTAGCCAACAATCTATACCAAGGATGGATGCAATACGCCATTGGCGGAAGCATGGGACCCAGCCTCAAAAGTGAAGCCAACCTCTTCATAGCACCAACATCTGGAAACAAAGAGGTGACATGGAGAAAAGAGAGCAATGGGAATATGGGAAAGTGGGAATTCCATTCGGTGGGGGATGTGTTCGAAAACGGAGCTTGCTTCACAGCAACCAAAGGAGGGCGAGTGCCGACGCCTTATTATAACAGCCAACAGATTTTTAAAGTTGCAGATGCCAAATATGTGAGGGCATTGACGAGATCTTCTGGTGCCTTACGTTGCAGCAAAACCTCCAGATGTTGA 1170 0.4667 MASQSFNSTLCHFVFAVAIILNIFAPALGSDQTSGLSMNVIDKCWRMNSEWRRHRPQLATCSVGYAGKMTDNIGKDLVHYKVTDPSDDPINPKPGTLRYGASIIQSRVWITFQRDMHIKLLKPLLVSSFTAIDGRGINVHISHNACLMIYKSTNIIIHGIRIHHCKAQPAGMVMGPEGKVIQVGQVDGDAIRLVSASNVWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYDRDKNMKVTVVYNHFGPNCNQRMPRIRFGYAHVANNLYQGWMQYAIGGSMGPSLKSEANLFIAPTSGNKEVTWRKESNGNMGKWEFHSVGDVFENGACFTATKGGRVPTPYYNSQQIFKVADAKYVRALTRSSGALRCSKTSRC 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00257 389 Gene3D - 38 382 IPR012334 -
Accr9g00257 389 PANTHER PECTATE LYASE 18-RELATED 36 386 IPR045032 GO:0030570
Accr9g00257 389 Pfam Pectate lyase 131 306 IPR002022 -
Accr9g00257 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Accr9g00257 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Accr9g00257 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Accr9g00257 389 PRINTS Pollen allergen Amb family signature 86 111 IPR018082 -
Accr9g00257 389 PRINTS Pollen allergen Amb family signature 329 353 IPR018082 -
Accr9g00257 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Accr9g00257 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Accr9g00257 389 SMART amb_all 115 312 IPR002022 -
Accr9g00257 389 SUPERFAMILY Pectin lyase-like 36 357 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00257 Accr-Chr9 2883373 2885039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00257 69 316 Polysaccharide Lyase AT5G09280 73.387 2.57e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00257 K01728 - gmx:100780437 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00257 9 2883373 2885039 Accr9g00257 9 2883373 2885039 ECH