Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00241 ATGAATCCTCATCCTCTTGATGACCACATGGTGCTTGTCTCTCAGCTATATCCTGGTGCTTACTCTCAGATAATTCCTCAACAAGGGGAGACAAAGCCGAGACGACGTCGTAAGAAGAACAAGGGAGGAGAAAACGGATCCGACGGCGGAGTGAAGAAGAGGAAGCTGAGTGCAGAGCAAGTGAATATGTTAGAACTGAACTTTGGGAACGAACATAAATTGGAGTCAGAACGGAAGGACAGGCTGGCGTCGGAACTGGGTTTGGATCCGCGTCAGGTGGCTGTTTGGTTCCAAAACCGAAGAGCGCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCTAACCTTAAGAAAGTCCACGACTCCACCATTCTCGAGAAATGCCGCCTTGAAACCGAGGTGTTGAAGCTGAAGGATCAGCTTTCAGAAGCAGAGAAAGATATTCAACGACTTCTCGAGCGTGTCGACAGGGTGTCAATCAGTAACAGCCCAAGTTCGTCACAGTCAGTTGAAGCTGTGAACCCACCGTTTCTGGGAGATCTTAGGGTTGAGGCTTATGGTGATGATGTGTTTTACATGCAACCGACACATTACATCAATGGCATGGATGATGAGTGGATGTACAACATGTGA 633 0.4787 MNPHPLDDHMVLVSQLYPGAYSQIIPQQGETKPRRRRKKNKGGENGSDGGVKKRKLSAEQVNMLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKVHDSTILEKCRLETEVLKLKDQLSEAEKDIQRLLERVDRVSISNSPSSSQSVEAVNPPFLGDLRVEAYGDDVFYMQPTHYINGMDDEWMYNM 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00241 210 CDD homeodomain 52 108 IPR001356 GO:0003677
Accr9g00241 210 MobiDBLite consensus disorder prediction 23 55 - -
Accr9g00241 210 MobiDBLite consensus disorder prediction 41 55 - -
Accr9g00241 210 FunFam homeobox-leucine zipper protein ATHB-40 46 115 - -
Accr9g00241 210 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
Accr9g00241 210 SMART HOX_1 50 111 IPR001356 GO:0003677
Accr9g00241 210 SUPERFAMILY Homeodomain-like 51 115 IPR009057 -
Accr9g00241 210 Coils Coil 99 126 - -
Accr9g00241 210 PRINTS Lambda-repressor HTH signature 78 87 IPR000047 GO:0003677
Accr9g00241 210 PRINTS Lambda-repressor HTH signature 87 103 IPR000047 GO:0003677
Accr9g00241 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 167 IPR045224 GO:0003700
Accr9g00241 210 Coils Coil 134 161 - -
Accr9g00241 210 Pfam Homeodomain 53 106 IPR001356 GO:0003677
Accr9g00241 210 Gene3D - 43 115 - -
Accr9g00241 210 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00241 Accr-Chr9 2705463 2707064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00241 1 207 Homeobox Transcription Factor Family AT4G36740 59.535 1.65e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Accr9g00241 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00241 K09338 - qsa:O6P43_024730 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00241 9 2705463 2707064 Accr10g00052 10 680285 681834 CCT
Accr9g00241 9 2705463 2707064 Accr9g00241 9 2705463 2707064 ECH