Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00235 ATGCCAGTTGATTTAGATAATTCTTCAACAGCTTCAGGGGAAGCTAGCGTCTCTTCCTCTGGCAATCAGACAGCTCCTCCTCCAAAGTCCACTGCTAAGAAGAAGAGAAATCTTCCAGGAATGCCAGATCCAGAAGCGGAGGTGATTGCACTGTCTCCAAAGACCCTTTTAGCGACGAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTTCAGAGGGATCAGAATCTTCAACTCCATCGACGGGGTCATAATCTGCCATGGAAGCTGAGGCAGAGGTCAGGCAAGGAGGTTAGGAAAAGAGTCTATGTTTGTCCTGAGCCAACCTGCGTTCATCATGATCCCTCTAGAGCTTTGGGTGATCTCACCGGAATTAAGAAGCATTTCTGTAGAAAACATGGTGAAAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCGGTTCAGTCAGATTGGAAGGCTCACTTTAAGATTTGTGGCACCAGAGAGTACAAATGCGATTGTGGGACTCTGTTTTCAAGGAGGGATAGCTTCATCACACACAGAGCATTCTGTGATGCGTTGGCAGAGGAGAGTGCAAGAAATCAACCTCAGCCCCAGACACAAGCTTCTGAGAAGCCTAGTTCAGAATCGGACCCAAAAATTACAAGCGGCGATTCATCCCCTACAGTTCCTGCACCGGCGCTGGCGGCTCCGCCACCACCTACAGCCTCGCCTCCGGCTCCTCAGTCAAGTAGCGTCATTCCATCTACCTTGCAGAAAAAAAATCCAGAGATGCCCGAAAATCCTTCACAAATCATAGAGGAACCACAGGCAACTGCTGCTTTAAATGGTAGCTGTAGCAGCAGTACAAGCTCAACCAGCAATGGCGGCACCGGTAGTACTGTATTTGCAAGCTTGTTTGCTTCCTCCACTGCTTCTGGAAGCCTTCAACCTTCTCCTCAACCTCAAGCTCCTCCGGCATTCACTGACCTAATCCGGGCCATGGCTCCCCCTGATCGTCCCCCAGAGCTCTCCGTACCTTCATCCTCAGAACCCATTTCTCTCTGCCTCTCCACGAGCAATGGGTCGTCAATCTTTGGAACAGGAGGACAAGAACGTCGCCAGTATGCCCCACCACCACAGCCAGCCATGTCCGCCACTGCCCTACTACAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAATGCATCATTGCTTCGTGGGTTTGGTATAGTGTCATCTTCCTCGTCTTCTCCGTCATTAAGCTTGCAAGATAACGTGCCATGGGGTCAGAGGCAAGTAGAACCGGAGAATGTGTCTGTTCATGCCGGGCTTGGACTTGGGCTCCCATGTGATGGTGGCTCCGGACTGAAGGAATTGATGATGGGGGCACCCTCCATGTTCGGTCCAAAGCACACGACCCTCGACTTTCTGGGGTTGGGGATGGCCGCTGCCCCTACTGGAGGCTTATCAGCACTCATCACTTCTATTGGTGGTGGTCTGGATGTTTCAACCACAGCAACACCATTTGGTAGTGGAGATATTTCAGGTAAAGATATTGGGAGGAGCTCGTGA 1560 0.5032 MPVDLDNSSTASGEASVSSSGNQTAPPPKSTAKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSGKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHFKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARNQPQPQTQASEKPSSESDPKITSGDSSPTVPAPALAAPPPPTASPPAPQSSSVIPSTLQKKNPEMPENPSQIIEEPQATAALNGSCSSSTSSTSNGGTGSTVFASLFASSTASGSLQPSPQPQAPPAFTDLIRAMAPPDRPPELSVPSSSEPISLCLSTSNGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSSSPSLSLQDNVPWGQRQVEPENVSVHAGLGLGLPCDGGSGLKELMMGAPSMFGPKHTTLDFLGLGMAAAPTGGLSALITSIGGGLDVSTTATPFGSGDISGKDIGRSS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00235 519 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Accr9g00235 519 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Accr9g00235 519 Gene3D Classic Zinc Finger 42 107 - -
Accr9g00235 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 480 IPR031140 -
Accr9g00235 519 MobiDBLite consensus disorder prediction 244 264 - -
Accr9g00235 519 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Accr9g00235 519 MobiDBLite consensus disorder prediction 194 224 - -
Accr9g00235 519 Gene3D Classic Zinc Finger 116 196 - -
Accr9g00235 519 MobiDBLite consensus disorder prediction 1 45 - -
Accr9g00235 519 MobiDBLite consensus disorder prediction 191 264 - -
Accr9g00235 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Accr9g00235 519 MobiDBLite consensus disorder prediction 227 243 - -
Accr9g00235 519 FunFam protein indeterminate-domain 12-like 41 109 - -
Accr9g00235 519 SMART c2h2final6 103 133 IPR013087 -
Accr9g00235 519 SMART c2h2final6 62 84 IPR013087 -
Accr9g00235 519 SMART c2h2final6 138 158 IPR013087 -
Accr9g00235 519 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00235 Accr-Chr9 2660267 2662505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00235 1 519 IDZ Gene Family AT5G66730 60.556 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr9g00235 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00235 K25869 - tcc:18610967 738.799