Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00226 ATGGGAGACTACAACGATGCTTTCATGCGCAACCAAAACGCTGCCGTGCAGGCTCGTACCAAAGCTCAGAACCGTGCCAATGTCCTCCAGCTCAAGCTGATCGGACAGAGTCATCCCACTGGTCTCACGGCTAACCTTTTGAAGCTTTTTGAGCCTAGGCCTCCGTTAGAGTATAAACCACCTCCAGACAAAAGGAAATGTCCGCCATTAACAGGGATGGCACAATTTGTGAGCAAGTTCGCAGAACCTGGAGATCCCGAATATGCCCCTCCTGTCCAAGAAGCTGAAACTCCTATGCAAAGAAGAGCTAGGATACACAAGCTAAGATTAGAGAAGGGGGAAGCAAAGGCTGCTGAAGAGCTAGAGAAATATGATCCTCGTAATGACCCAAATATTTCGGGAGATCCATACAAGACCTTGTTCGTGGCCAGACTTAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTGGTTACAGACAAAAACACAAATAAGCCCAAGGGTTATGCATTCATTGAGTATCTGCACACAAGGGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTAGATGTTGAACGTGGCAGGACTGTTCCCAATTGGAGGCCTCGCCGACTAGGTGGAGGGCTTGGTACTACTAGAGTAGGGGGAGAAGAAGTTAATCAGCGGTATTCTGGGAGGGAACAACTGCAATCAGGACCCTCTCGTTCTGAAGAACCAAAAGTGCGGGAGGAACGACAGGTTGATCGGGATAGAGAAAAATCTCGTGAAAGAGGTAGGGACAGAGATAGAGAACGGGAACGATCACGTGAACGTTCTCATGATAGGAACCGCACTCGGGACCATAGAGAGGATAGGCATCATAGAGATCGGGATAGGACTAGAGATAGGGAAAGGGAAAGAGATCGTGGTCGTGATCGCGATAGAGATCGTGGTCGTGATCGGGAGCGAGGACGCGATCGTGATAGGGACAGGGATCGTGATAGGGACAGAGAATACGATCGCCACCGTGAAAGGGATAGGGACTATGAAGTTGGGGATCTTGAACGTGGACGCTCACATGATAGGGAGTCTGATTTTGATCTTGTTGATTCCAAACATGAGAGGGACCGACATGTTGAAAAGGAGCGAGACTATGAACCTGAGGATGATCGGGCATGGTACAATCAACCTGAGCATGGACATAGGCATGCAGACCCTGATCGCGATGTTGAGGAATATGATCACTATGAGCATCATCAAGGACGAGAGCATTATGATCGTGGAGATGGTGACCATTATGATCAATATCCTGACCATGATCGGCTGGAGGATGACTACCACAATGAGCGCACAGCATCTGAATCTCGTGACCGGGAGAGAAATCATGATACAAAGAGGTCTCGTTCTCGAGAGTATGATTAG 1467 0.4819 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPDKRKCPPLTGMAQFVSKFAEPGDPEYAPPVQEAETPMQRRARIHKLRLEKGEAKAAEELEKYDPRNDPNISGDPYKTLFVARLSYETTESRIKREFESYGPIKRVRLVTDKNTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQLQSGPSRSEEPKVREERQVDRDREKSRERGRDRDRERERSRERSHDRNRTRDHREDRHHRDRDRTRDRERERDRGRDRDRDRGRDRERGRDRDRDRDRDRDREYDRHRERDRDYEVGDLERGRSHDRESDFDLVDSKHERDRHVEKERDYEPEDDRAWYNQPEHGHRHADPDRDVEEYDHYEHHQGREHYDRGDGDHYDQYPDHDRLEDDYHNERTASESRDRERNHDTKRSRSREYD 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00226 488 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Accr9g00226 488 SMART rrm1_1 139 212 IPR000504 GO:0003723
Accr9g00226 488 SUPERFAMILY RNA-binding domain, RBD 127 238 IPR035979 GO:0003676
Accr9g00226 488 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Accr9g00226 488 Gene3D - 125 250 IPR012677 -
Accr9g00226 488 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 290 - -
Accr9g00226 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Accr9g00226 488 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Accr9g00226 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Accr9g00226 488 MobiDBLite consensus disorder prediction 220 488 - -
Accr9g00226 488 MobiDBLite consensus disorder prediction 258 488 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00226 140 186 C2H2 Transcription Factor Family AT2G19380 40.426 7.74e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00226 K11093 - qsa:O6P43_033721 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00226 9 2487980 2492862 Accr9g00226 9 2487980 2492862 ECH