Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr9g00224 ATGGAGAACGGAGTGAAGAGCAATGGAGATGCAAAGTCACCGACTTTAGTAGAAAACAATGAGATGAAGACAGAGGAAGTTGATTTTAAGAATGACGAGCCGTTTATACCAAGGTCAATGGAAGAAGAGGAAAAACGGCTTTTGGAAAATCGAATCAAGGAAGAGGAGGAGGAATCCAAACATGAGCCAGATGAGGCACCAAAGCTTGATGATTCTCAGTTTAGCAAGTTGGATGAGCTTTTAACACAAACCCAACTTTACACGAAATTTCTACTCGAGAAAATGGAAGACATCACACTTAATGGGGGCGAACAAGAGGATGAGCCGGTTGAGAAAAAGAGGGGCCGTGGCTCAAAAAGAAAAGCAAAATCAGAATATAATAATAAGAAAGCCAGAAGGGCAGTAGCTGCCATGCTTACACGATCAAAAGAAAGTGAGAGTACTGAGGATATGAACCTGACAGAAGAGGAAAGAACTGATAAGGAGCAGAAAGAGCTCATACCTCTGTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAGAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTCCTTGCACATCTTAAAGGGAATGGTTTGGATGGCCCATATTTGATAATTGCTCCTTTATCAACCCTTTCTAACTGGATGAGTGAAATTTCTCGGTTTGCTCCAACGCTCACTGCTATTATTTACCATGGTAACAAGAAGGAAAGAGATGAGCTCCGAAGGAAGCATATGCCCAGAACGGTTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGATGCTAAGAGATGTCTTATGTTTTACCATTGGAAATATCTTGTAATTGACGAGGGACACAGGCTCAAAAACTCAAAGTGCAAATTAGTGCGGATGTTGAAATATTTACCCGTTGAAAATAAACTTTTATTAACTGGGACACCACTTCAGAATAATTTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCGCATCCCAAGAAGAATTCGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCTACAAAAGAAGAATTAGAAGAAGGAAGAAGAGCTCAGGTGGTAGCTAAGCTCCATGCTATCCTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATCATTATATATGCTATTATGACTGAACTTCAGAAGAATTTTCAGGAACATTTAATTAATAAGACATTGGAGAAATATCTCCGTGAAAAGTCTTCAGGGGGACGTGCTTCAATAAATATTCGTAATGTGGTCATTCAGCTTAGAAAGAACTGTAATCATCCCGACCTCTTAGAGTCACCCTTTGATGATTCCTTTTTCTATCCACCTATCAATGAGATGGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGACTGTTGGCTCATTTACTTGCACGGAATCACAAAGTACTAATCTTTAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGAATTGATGGCGGAGTAAAGCTAGATGAAAGGAAAAGACTGATTCAGGAATTCAATGATGTGAATAGCAATTACAGGGTCTTTATTCTCAGTACTAGGGCTGGTGGATTGGGAATTAACCTTACTGCAGCTGACACTTGTATCATTTATGATAGTGATTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAGCCTGTTCATGTTTACAGGCTTGCAACAGCTCACTCTGTCGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTAATCAAGAGCGGATGAAGTCCAACTCTGAGGATGTCAAAGAGGAGGATGAGGAATTGTTGGAATTGCTTAAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTGGAGAAGCTTTTGGACCGCAGTGATCTTATCGCTGGTAAGGTAAACTGCCCGAGCAAAATTCCTCTTAAAGGACCTGGATGGGAGGTGGTGATTCCAACCGGGAGCGTGCTTTCTACTCTTAACAACTAA 2211 0.4084 MENGVKSNGDAKSPTLVENNEMKTEEVDFKNDEPFIPRSMEEEEKRLLENRIKEEEEESKHEPDEAPKLDDSQFSKLDELLTQTQLYTKFLLEKMEDITLNGGEQEDEPVEKKRGRGSKRKAKSEYNNKKARRAVAAMLTRSKESESTEDMNLTEEERTDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGNGLDGPYLIIAPLSTLSNWMSEISRFAPTLTAIIYHGNKKERDELRRKHMPRTVGPKFPIVITSYEVALNDAKRCLMFYHWKYLVIDEGHRLKNSKCKLVRMLKYLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFASQEEFESWFNLSGKCSNGATKEELEEGRRAQVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYAIMTELQKNFQEHLINKTLEKYLREKSSGGRASINIRNVVIQLRKNCNHPDLLESPFDDSFFYPPINEMVEQCGKFRLLDRLLAHLLARNHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGGVKLDERKRLIQEFNDVNSNYRVFILSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAHSVEGRMLKRAFSKLKLEHVVIGKGQFNQERMKSNSEDVKEEDEELLELLKEEESAEDKAIQTDISDEDLEKLLDRSDLIAGKVNCPSKIPLKGPGWEVVIPTGSVLSTLNN 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr9g00224 736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 355 IPR014001 -
Accr9g00224 736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 671 IPR001650 -
Accr9g00224 736 FunFam ATP-dependent DNA helicase DDM1 169 414 - -
Accr9g00224 736 Gene3D - 176 406 IPR038718 -
Accr9g00224 736 FunFam Chromatin complex subunit A 106 415 642 - -
Accr9g00224 736 SMART helicmild6 527 611 IPR001650 -
Accr9g00224 736 MobiDBLite consensus disorder prediction 1 76 - -
Accr9g00224 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 405 IPR027417 -
Accr9g00224 736 Coils Coil 656 683 - -
Accr9g00224 736 MobiDBLite consensus disorder prediction 19 75 - -
Accr9g00224 736 Gene3D - 411 710 IPR027417 -
Accr9g00224 736 Coils Coil 38 60 - -
Accr9g00224 736 CDD SF2_C_SNF 487 621 - -
Accr9g00224 736 SMART ultradead3 171 366 IPR014001 -
Accr9g00224 736 Pfam Helicase conserved C-terminal domain 500 611 IPR001650 -
Accr9g00224 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 699 IPR027417 -
Accr9g00224 736 MobiDBLite consensus disorder prediction 1 18 - -
Accr9g00224 736 Pfam SNF2-related domain 178 475 IPR000330 GO:0005524|GO:0140658
Accr9g00224 736 PANTHER SNF2/RAD54 HELICASE FAMILY 29 680 - -
Accr9g00224 736 MobiDBLite consensus disorder prediction 102 127 - -
Accr9g00224 736 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr9g00224 Accr-Chr9 2471599 2476955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr9g00224 161 632 RAD5 or RAD16-like Gene Family AT3G16600 23.917 2.64e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr9g00224 SNF2_N 1.6e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr9g00224 K19001 - qsu:111991807 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00224 9 2471599 2476955 Accr9g00224 9 2471599 2476955 ECH